RNA–Protein interactions for RNA: ENST00000641891.1

PHGDH-229, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 2,175 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-229	ENST00000641891	NDUFB4	O95168	129 aa		13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891	MEOX2	P50222	304 aa		13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891	RAB31	Q13636	194 aa		13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891	GAMT	Q14353	236 aa		13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891	TGIF2LX	Q8IUE1	241 aa		13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891	WASHC3	Q9Y3C0	194 aa		13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891	YTHDF2	Q9Y5A9	579 aa	Known RBP	13.73	□□□□□ -0.21
PHGDH-229	ENST00000641891		A0A087X0M5	115 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891		A0A1B0GX30	115 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	ZNF672	Q499Z4	452 aa	Predicted RBP	13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	FAM71F2	Q6NXP2	309 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	OR1L8	Q8NGR8	309 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	ELOVL1	Q9BW60	279 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	TMEM133	Q9H2Q1	129 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	SLC45A2	Q9UMX9	530 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	ZZEF1	O43149	2961 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	FNDC10	F2Z333	226 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	PDE6D	O43924	150 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	NDUFS6	O75380	124 aa	Known RBP	13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	LY6H	O94772	140 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	GCHFR	P30047	84 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	ZNF137P	P52743	207 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	RHOB	P62745	196 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	ZNF841	Q6ZN19	808 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	MIR17HG	Q75NE6	70 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	TMEM144	Q7Z5S9	345 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	TMEM167A	Q8TBQ9	72 aa		13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	ZNF430	Q9H8G1	570 aa	Predicted RBP	13.72	□□□□□ -0.21
PHGDH-229	ENST00000641891	SCO2	A0A1W2PP80	73 aa		13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	PGPEP1L	A6NFU8	196 aa		13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	USF1	P22415	310 aa	Predicted RBP	13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	OR10J1	P30954	320 aa		13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	NDUFA6	P56556	154 aa		13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	CLEC12B	Q2HXU8	276 aa		13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	OR4P4	Q8NGL7	312 aa		13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	RALY	Q9UKM9	306 aa	Known RBP	13.71	□□□□□ -0.21
PHGDH-229	ENST00000641891	ENSA	O43768	121 aa	Known RBP	13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	SLC25A17	O43808	307 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BK	O60814	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BJ	P06899	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	PFN1	P07737	140 aa	Known RBP	13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BO	P23527	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BB	P33778	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BD	P58876	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BC	P62807	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	WT1-AS	Q06250	92 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST2H2BE	Q16778	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	ZNF114	Q8NC26	417 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BH	Q93079	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BN	Q99877	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891	HIST1H2BM	Q99879	126 aa		13.71	□□□□□ -0.22
PHGDH-229	ENST00000641891		H7BYZ3	331 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	IGHV2-70	P01814	119 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	CD69	Q07108	199 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	FAM78B	Q5VT40	261 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	SLC16A13	Q7RTY0	426 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	OR2T6	Q8NHC8	308 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	DOK5	Q9P104	306 aa		13.7	□□□□□ -0.22
PHGDH-229	ENST00000641891	TRBV24-1	A0A075B6N3	115 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	TRBV23-1	A0A0A0MS06	115 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	IGHV2-26	A0A0B4J1V2	119 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	CLN5	O75503	358 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	GALR1	P47211	349 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	PPOX	P50336	477 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	SSBP2	P81877	361 aa	Predicted RBP	13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	MRGPRG-AS1	Q2M3A8	158 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	C4orf17	Q53FE4	359 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	LINC01551	Q86U37	167 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891		F6UZH7	168 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	DLL1	O00548	723 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	IGHV3-48	P01763	117 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	REG1A	P05451	166 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	ERH	P84090	104 aa	Known RBP	13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	OR4A5	Q8NH83	315 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	VSTM2A	Q8TAG5	236 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	FRZB	Q92765	325 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	ACY3	Q96HD9	319 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	PCGF1	Q9BSM1	259 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	LRBA	P50851	2863 aa		13.69	□□□□□ -0.22
PHGDH-229	ENST00000641891	TRBV20OR9-2	A0A075B6H5	130 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	VENTX	O95231	258 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	CNTFR	P26992	372 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	CHRNA7	P36544	502 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	DCHS2	Q6V1P9	2916 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	C1QTNF9	P0C862	333 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	TRGC1	P0CF51	173 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	COX7A1	P24310	79 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891	FUT9	Q9Y231	359 aa		13.68	□□□□□ -0.22
PHGDH-229	ENST00000641891		A0A1W2PN81	502 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	IFITM10	A6NMD0	228 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	PHOX2A	O14813	284 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	HOXA5	P20719	270 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	HNF1A	P20823	631 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	ATP5I	P56385	69 aa	Predicted RBP	13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	VMA21	Q3ZAQ7	101 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	NANP	Q8TBE9	248 aa		13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891	FNDC4	Q9H6D8	234 aa	Predicted RBP	13.67	□□□□□ -0.22
PHGDH-229	ENST00000641891		A0A1W2PPI3	338 aa		13.66	□□□□□ -0.22
PHGDH-229	ENST00000641891	IGLV1-47	P01700	117 aa		13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms