RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 H2BFWTQ7Z2G1 175 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 NRARPQ7Z6K4 114 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 SELENOHQ8IZQ5 122 aaKnown RBP14.72□□□□□ -0.05
CLN3-260ENST00000637578 OR4C12Q96R67 309 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 NSG2Q9Y328 171 aa14.72□□□□□ -0.05
CLN3-260ENST00000637578 ATG12O94817 140 aa14.71□□□□□ -0.05
CLN3-260ENST00000637578 SFT2D2O95562 160 aa14.71□□□□□ -0.05
CLN3-260ENST00000637578 P0C879 139 aa14.71□□□□□ -0.05
CLN3-260ENST00000637578 ATP5G2Q06055 141 aa14.71□□□□□ -0.05
CLN3-260ENST00000637578 ELOVL1Q9BW60 279 aa14.71□□□□□ -0.05
CLN3-260ENST00000637578 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.7□□□□□ -0.06
CLN3-260ENST00000637578 A0A0G2JRQ6 117 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 IGLV1-51P01701 117 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 SPNP16150 400 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 OR2B8PP59922 312 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 ANKRD55Q3KP44 614 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 OR9G4Q8NGQ1 327 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 FANCD2OSQ96PS1 177 aa14.7□□□□□ -0.06
CLN3-260ENST00000637578 FYTTD1Q96QD9 318 aaKnown RBP14.7□□□□□ -0.06
CLN3-260ENST00000637578 C9orf170A2RU37 121 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 SNAPC5O75971 98 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 HLA-AP01891 365 aaKnown RBP14.69□□□□□ -0.06
CLN3-260ENST00000637578 H2AFB2P0C5Z0 115 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 OR4E1P0C645 316 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 AREGP15514 252 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 CTRB1P17538 263 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 PSMB6P28072 239 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 SRPXP78539 464 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 DHRS2Q13268 280 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 C4orf46Q504U0 113 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 CTRB2Q6GPI1 263 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 LGI3Q8N145 548 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 SLC35G3Q8N808 338 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 RNASE11Q8TAA1 199 aaKnown RBP14.69□□□□□ -0.06
CLN3-260ENST00000637578 IL22RA2Q969J5 263 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 RRNAD1Q96FB5 475 aaKnown RBP14.69□□□□□ -0.06
CLN3-260ENST00000637578 DMRT1Q9Y5R6 373 aa14.69□□□□□ -0.06
CLN3-260ENST00000637578 DBX1A6NMT0 343 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 SYNJ2BPP57105 145 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 EXOSC2Q13868 293 aaKnown RBP14.68□□□□□ -0.06
CLN3-260ENST00000637578 C15orf32Q32M92 178 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 FAM209BQ5JX69 171 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 C19orf35Q6ZS72 473 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 LYG2Q86SG7 212 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 DUSP18Q8NEJ0 188 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 COMMD5Q9GZQ3 224 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 SIGLEC8Q9NYZ4 499 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 PRNDQ9UKY0 176 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 C15orf61A6NNL5 157 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 BMPR1BO00238 502 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 OR2J3O76001 311 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 LY86O95711 162 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 GP9P14770 177 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 C11orf87Q6NUJ2 197 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 LYZL2Q7Z4W2 148 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 SRSF8Q9BRL6 282 aaKnown RBP14.68□□□□□ -0.06
CLN3-260ENST00000637578 PALMDQ9NP74 551 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 TMEM14BQ9NUH8 114 aa14.68□□□□□ -0.06
CLN3-260ENST00000637578 A0A0B4J293 547 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 A0A0B4J2A0 478 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 NHLRC4P0CG21 123 aaPredicted RBP14.67□□□□□ -0.06
CLN3-260ENST00000637578 MECP2P51608 486 aaKnown RBP14.67□□□□□ -0.06
CLN3-260ENST00000637578 RPEL1Q2QD12 228 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 FAM219AQ8IW50 185 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 OR52B4Q8NGK2 314 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 OR4A16Q8NH70 328 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 SHPKQ9UHJ6 478 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 OR51B2Q9Y5P1 312 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 SMAD5-AS1Q9Y6J3 95 aa14.67□□□□□ -0.06
CLN3-260ENST00000637578 TEX50A0A1B0GTY4 177 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 IGLC7A0M8Q6 106 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 CSN3P07498 182 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 TATDN3Q17R31 274 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 Q6ZRM9 215 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 LRTM2Q8N967 370 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 LSM10Q969L4 123 aaKnown RBP14.66□□□□□ -0.06
CLN3-260ENST00000637578 GPR146Q96CH1 333 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 FBXL7Q9UJT9 491 aa14.66□□□□□ -0.06
CLN3-260ENST00000637578 IGLV11-55A0A075B6I3 123 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 NDUFB8O95169 186 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 DHFRP00374 187 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 PLET1Q6UQ28 207 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 OR1L8Q8NGR8 309 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 SEC22CQ9BRL7 303 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 QTRT1Q9BXR0 403 aaKnown RBP14.65□□□□□ -0.06
CLN3-260ENST00000637578 FKBP11Q9NYL4 201 aa14.65□□□□□ -0.06
CLN3-260ENST00000637578 HIST1H1BP16401 226 aaKnown RBP14.64□□□□□ -0.07
CLN3-260ENST00000637578 NMSQ5H8A3 153 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 HAPLN4Q86UW8 402 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 OR5B3Q8NH48 314 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 HINT2Q9BX68 163 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 NDUFA4L2Q9NRX3 87 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 CACNG5Q9UF02 275 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 REG1AP05451 166 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 THOC7Q6I9Y2 204 aaKnown RBP14.64□□□□□ -0.07
CLN3-260ENST00000637578 OR10W1Q8NGF6 305 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 COQ8AQ8NI60 647 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 CCDC140Q96MF4 163 aa14.64□□□□□ -0.07
CLN3-260ENST00000637578 PIGBOS1A0A0B4J2F0 54 aa14.63□□□□□ -0.07
CLN3-260ENST00000637578 DUXBA0A1W2PPF3 345 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms