RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 FBXL7Q9UJT9 491 aa14.07□□□□□ -0.16
CLN3-259ENST00000637551 A0A0B4J293 547 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 RBMXL2O75526 392 aaKnown RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 HOXD3P31249 432 aaPredicted RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 TATDN3Q17R31 274 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 SP6Q3SY56 376 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 SELENOHQ8IZQ5 122 aaKnown RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 LGI3Q8N145 548 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 CENPSQ8N2Z9 138 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 OR2C3Q8N628 320 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 RNASE11Q8TAA1 199 aaKnown RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 EEF1AKMT3Q96AZ1 226 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 DUX3Q96PT4 197 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 OR5B12Q96R08 314 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 WDR12Q9GZL7 423 aaKnown RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 PLEKHA3Q9HB20 300 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 GAR1Q9NY12 217 aaKnown RBP14.06□□□□□ -0.16
CLN3-259ENST00000637551 SIGLEC8Q9NYZ4 499 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 SORL1Q92673 2214 aa14.06□□□□□ -0.16
CLN3-259ENST00000637551 OR2J3O76001 311 aa14.05□□□□□ -0.16
CLN3-259ENST00000637551 SLC25A6P12236 298 aa14.05□□□□□ -0.16
CLN3-259ENST00000637551 ERHP84090 104 aaKnown RBP14.05□□□□□ -0.16
CLN3-259ENST00000637551 DCTN2Q13561 401 aaKnown RBP14.05□□□□□ -0.16
CLN3-259ENST00000637551 KLF5Q13887 457 aaPredicted RBP14.05□□□□□ -0.16
CLN3-259ENST00000637551 TMEM268Q5VZI3 342 aa14.05□□□□□ -0.16
CLN3-259ENST00000637551 ACSM6Q6P461 480 aa14.05□□□□□ -0.16
CLN3-259ENST00000637551 OR10W1Q8NGF6 305 aa14.05□□□□□ -0.16
CLN3-259ENST00000637551 ALX4Q9H161 411 aaPredicted RBP14.05□□□□□ -0.16
CLN3-259ENST00000637551 NSG2Q9Y328 171 aa14.05□□□□□ -0.16
CLN3-259ENST00000637551 DBX1A6NMT0 343 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 SEC14L6B5MCN3 397 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 CORTO00230 105 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 MYOD1P15172 320 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 AKR1C4P17516 323 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 FCGR2BP31994 310 aaPredicted RBP14.04□□□□□ -0.16
CLN3-259ENST00000637551 RAB25P57735 213 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 SPCS3P61009 180 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 NMSQ5H8A3 153 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 PVRIGQ6DKI7 326 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 LHFPL5Q8TAF8 219 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 DCUN1D4Q92564 292 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 DLX4Q92988 240 aaPredicted RBP14.04□□□□□ -0.16
CLN3-259ENST00000637551 ELOVL1Q9BW60 279 aa14.04□□□□□ -0.16
CLN3-259ENST00000637551 PRH1P02810 166 aa14.03□□□□□ -0.16
CLN3-259ENST00000637551 CCR6P51684 374 aa14.03□□□□□ -0.16
CLN3-259ENST00000637551 RPEL1Q2QD12 228 aa14.03□□□□□ -0.16
CLN3-259ENST00000637551 SPSB3Q6PJ21 355 aa14.03□□□□□ -0.16
CLN3-259ENST00000637551 C1QL4Q86Z23 238 aa14.03□□□□□ -0.16
CLN3-259ENST00000637551 SLC35G3Q8N808 338 aa14.03□□□□□ -0.16
CLN3-259ENST00000637551 A0A1B0GU03 582 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 LGALS9O00182 355 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 ST8SIA3O43173 380 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 GGCTO75223 188 aaKnown RBP14.02□□□□□ -0.17
CLN3-259ENST00000637551 SULT1A3P0DMM9 295 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 SULT1A4P0DMN0 295 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 BTCP35070 178 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 MECP2P51608 486 aaKnown RBP14.02□□□□□ -0.17
CLN3-259ENST00000637551 SUB1P53999 127 aaKnown RBP eCLIP14.02□□□□□ -0.17
CLN3-259ENST00000637551 TMED4Q7Z7H5 227 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 GPHB5Q86YW7 130 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 ZNF502Q8TBZ5 544 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 CCDC140Q96MF4 163 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 TXN2Q99757 166 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 HINT2Q9BX68 163 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 PEMTQ9UBM1 199 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 TMED3Q9Y3Q3 217 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 DMRT1Q9Y5R6 373 aa14.02□□□□□ -0.17
CLN3-259ENST00000637551 BMPR1BO00238 502 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 LYRM1O43325 122 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 NDUFB8O95169 186 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 SFT2D2O95562 160 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 IFNA17P01571 189 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 REG1AP05451 166 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 SLURP1P55000 103 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 ATP5IP56385 69 aaPredicted RBP14.01□□□□□ -0.17
CLN3-259ENST00000637551 ZNF846Q147U1 533 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 BSXQ3C1V8 233 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 OR9G4Q8NGQ1 327 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 BSCL2Q96G97 398 aaPredicted RBP14.01□□□□□ -0.17
CLN3-259ENST00000637551 ENY2Q9NPA8 101 aa14.01□□□□□ -0.17
CLN3-259ENST00000637551 A0A0G2JRQ6 117 aa14□□□□□ -0.17
CLN3-259ENST00000637551 FAM90A26D6RGX4 464 aa14□□□□□ -0.17
CLN3-259ENST00000637551 LY86O95711 162 aa14□□□□□ -0.17
CLN3-259ENST00000637551 SNCAP37840 140 aa14□□□□□ -0.17
CLN3-259ENST00000637551 SMCO1Q147U7 214 aa14□□□□□ -0.17
CLN3-259ENST00000637551 NOXA1Q86UR1 476 aa14□□□□□ -0.17
CLN3-259ENST00000637551 CACNG5Q9UF02 275 aa14□□□□□ -0.17
CLN3-259ENST00000637551 ANKRD34BA5PLL1 514 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 A8MWP6 167 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 PLA2G10O15496 165 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 HLA-AP01891 365 aaKnown RBP13.99□□□□□ -0.17
CLN3-259ENST00000637551 VAMP1P23763 118 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 HTR2BP41595 481 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 PPP1R1AQ13522 171 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 SLC25A24Q6NUK1 477 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 Q6ZRM9 215 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 GPR146Q96CH1 333 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 OR4C12Q96R67 309 aa13.99□□□□□ -0.17
CLN3-259ENST00000637551 C21orf62Q9NYP8 219 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms