RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ISOC1Q96CN7 298 aa8.82□□□□□ -1
CLN3-257ENST00000637110 SIGLEC8Q9NYZ4 499 aa8.82□□□□□ -1
CLN3-257ENST00000637110 C14orf166Q9Y224 244 aaKnown RBP8.82□□□□□ -1
CLN3-257ENST00000637110 F11RQ9Y624 299 aaKnown RBP8.82□□□□□ -1
CLN3-257ENST00000637110 SELENOKQ9Y6D0 94 aa8.82□□□□□ -1
CLN3-257ENST00000637110 C3orf85A0A1B0GTC6 90 aa8.81□□□□□ -1
CLN3-257ENST00000637110 IZUMO1RA6ND01 250 aa8.81□□□□□ -1
CLN3-257ENST00000637110 C15orf61A6NNL5 157 aa8.81□□□□□ -1
CLN3-257ENST00000637110 LGALS9O00182 355 aa8.81□□□□□ -1
CLN3-257ENST00000637110 CD74P04233 296 aa8.81□□□□□ -1
CLN3-257ENST00000637110 IGHV4-30-4P0DP06 118 aa8.81□□□□□ -1
CLN3-257ENST00000637110 EDN2P20800 178 aa8.81□□□□□ -1
CLN3-257ENST00000637110 PTBP1P26599 531 aaKnown RBP eCLIP8.81□□□□□ -1
CLN3-257ENST00000637110 RND3P61587 244 aa8.81□□□□□ -1
CLN3-257ENST00000637110 SSBP1Q04837 148 aaKnown RBP8.81□□□□□ -1
CLN3-257ENST00000637110 MEF2DQ14814 521 aa8.81□□□□□ -1
CLN3-257ENST00000637110 SP6Q3SY56 376 aa8.81□□□□□ -1
CLN3-257ENST00000637110 CD300EQ496F6 205 aaPredicted RBP8.81□□□□□ -1
CLN3-257ENST00000637110 Q56UQ5 140 aa8.81□□□□□ -1
CLN3-257ENST00000637110 FAAP20Q6NZ36 180 aa8.81□□□□□ -1
CLN3-257ENST00000637110 LHFPL1Q86WI0 220 aa8.81□□□□□ -1
CLN3-257ENST00000637110 OR1L6Q8NGR2 347 aa8.81□□□□□ -1
CLN3-257ENST00000637110 OR13C8Q8NGS7 320 aa8.81□□□□□ -1
CLN3-257ENST00000637110 OR2K2Q8NGT1 345 aa8.81□□□□□ -1
CLN3-257ENST00000637110 MCFD2Q8NI22 146 aa8.81□□□□□ -1
CLN3-257ENST00000637110 ZNF502Q8TBZ5 544 aa8.81□□□□□ -1
CLN3-257ENST00000637110 MARCH1Q8TCQ1 289 aa8.81□□□□□ -1
CLN3-257ENST00000637110 VN1R17PQ8TDU5 208 aa8.81□□□□□ -1
CLN3-257ENST00000637110 MISP3Q96FF7 219 aa8.81□□□□□ -1
CLN3-257ENST00000637110 SEC22AQ96IW7 307 aa8.81□□□□□ -1
CLN3-257ENST00000637110 PDCD10Q9BUL8 212 aa8.81□□□□□ -1
CLN3-257ENST00000637110 SLC2A8Q9NY64 477 aa8.81□□□□□ -1
CLN3-257ENST00000637110 RABL2AQ9UBK7 228 aaPredicted RBP8.81□□□□□ -1
CLN3-257ENST00000637110 RABL2BQ9UNT1 228 aa8.81□□□□□ -1
CLN3-257ENST00000637110 DMRT1Q9Y5R6 373 aa8.81□□□□□ -1
CLN3-257ENST00000637110 PCLOQ9Y6V0 5065 aa8.81□□□□□ -1
CLN3-257ENST00000637110 STARD9Q9P2P6 4700 aa8.81□□□□□ -1
CLN3-257ENST00000637110 TEX13DA0A0J9YY54 714 aaPredicted RBP8.8□□□□□ -1
CLN3-257ENST00000637110 OR2T8A6NH00 312 aa8.8□□□□□ -1
CLN3-257ENST00000637110 DBX1A6NMT0 343 aa8.8□□□□□ -1
CLN3-257ENST00000637110 H3BMQ9 156 aa8.8□□□□□ -1
CLN3-257ENST00000637110 IGKV1-39P01597 117 aa8.8□□□□□ -1
CLN3-257ENST00000637110 IGKV1D-39P04432 117 aa8.8□□□□□ -1
CLN3-257ENST00000637110 AKAIN1P0CW23 69 aa8.8□□□□□ -1
CLN3-257ENST00000637110 CBLN1P23435 193 aa8.8□□□□□ -1
CLN3-257ENST00000637110 CD81P60033 236 aa8.8□□□□□ -1
CLN3-257ENST00000637110 ERHP84090 104 aaKnown RBP8.8□□□□□ -1
CLN3-257ENST00000637110 IZUMO4Q1ZYL8 232 aa8.8□□□□□ -1
CLN3-257ENST00000637110 KLK9Q2XQG4 91 aa8.8□□□□□ -1
CLN3-257ENST00000637110 DEFB114Q30KQ6 69 aa8.8□□□□□ -1
CLN3-257ENST00000637110 SPINK9Q5DT21 86 aa8.8□□□□□ -1
CLN3-257ENST00000637110 CADM3Q8N126 398 aa8.8□□□□□ -1
CLN3-257ENST00000637110 Q8N1Y9 231 aa8.8□□□□□ -1
CLN3-257ENST00000637110 UXS1Q8NBZ7 420 aa8.8□□□□□ -1
CLN3-257ENST00000637110 SMIM4Q8WVI0 70 aa8.8□□□□□ -1
CLN3-257ENST00000637110 CACNG8Q8WXS5 425 aa8.8□□□□□ -1
CLN3-257ENST00000637110 RRNAD1Q96FB5 475 aaKnown RBP8.8□□□□□ -1
CLN3-257ENST00000637110 TP53RKQ96S44 253 aa8.8□□□□□ -1
CLN3-257ENST00000637110 PLEKHA3Q9HB20 300 aa8.8□□□□□ -1
CLN3-257ENST00000637110 TMEM14BQ9NUH8 114 aa8.8□□□□□ -1
CLN3-257ENST00000637110 C21orf62Q9NYP8 219 aa8.8□□□□□ -1
CLN3-257ENST00000637110 TECRQ9NZ01 308 aaKnown RBP8.8□□□□□ -1
CLN3-257ENST00000637110 RSL24D1Q9UHA3 163 aaKnown RBP8.8□□□□□ -1
CLN3-257ENST00000637110 KLK9Q9UKQ9 250 aa8.8□□□□□ -1
CLN3-257ENST00000637110 FABP12A6NFH5 140 aa8.79□□□□□ -1
CLN3-257ENST00000637110 TGOLN2O43493 480 aa8.79□□□□□ -1
CLN3-257ENST00000637110 IFNA17P01571 189 aa8.79□□□□□ -1
CLN3-257ENST00000637110 CTSDP07339 412 aaPredicted RBP8.79□□□□□ -1
CLN3-257ENST00000637110 HSPE1P61604 102 aaKnown RBP8.79□□□□□ -1
CLN3-257ENST00000637110 TM4SF20Q53R12 229 aa8.79□□□□□ -1
CLN3-257ENST00000637110 ZNF57Q68EA5 555 aaPredicted RBP8.79□□□□□ -1
CLN3-257ENST00000637110 SLC35G3Q8N808 338 aa8.79□□□□□ -1
CLN3-257ENST00000637110 SCARB1Q8WTV0 552 aa8.79□□□□□ -1
CLN3-257ENST00000637110 PINX1Q96BK5 328 aaKnown RBP8.79□□□□□ -1
CLN3-257ENST00000637110 NEURL2Q9BR09 285 aa8.79□□□□□ -1
CLN3-257ENST00000637110 C20orf24Q9BUV8 137 aa8.79□□□□□ -1
CLN3-257ENST00000637110 ENY2Q9NPA8 101 aa8.79□□□□□ -1
CLN3-257ENST00000637110 UFC1Q9Y3C8 167 aa8.79□□□□□ -1
CLN3-257ENST00000637110 CTDSPLO15194 276 aa8.78□□□□□ -1
CLN3-257ENST00000637110 SCAF4O95104 1147 aaKnown RBP8.78□□□□□ -1
CLN3-257ENST00000637110 IGKV1-5P01602 117 aa8.78□□□□□ -1
CLN3-257ENST00000637110 TNFSF8P32971 234 aa8.78□□□□□ -1
CLN3-257ENST00000637110 SNCAP37840 140 aa8.78□□□□□ -1
CLN3-257ENST00000637110 MFAP2P55001 183 aa8.78□□□□□ -1
CLN3-257ENST00000637110 PRCDQ00LT1 54 aa8.78□□□□□ -1
CLN3-257ENST00000637110 UNQ9165/PRO28630Q6UXU0 137 aa8.78□□□□□ -1
CLN3-257ENST00000637110 RBPMS2Q6ZRY4 209 aaKnown RBP8.78□□□□□ -1
CLN3-257ENST00000637110 OR2C3Q8N628 320 aa8.78□□□□□ -1
CLN3-257ENST00000637110 OR4C16Q8NGL9 310 aa8.78□□□□□ -1
CLN3-257ENST00000637110 OR1P1Q8NH06 330 aa8.78□□□□□ -1
CLN3-257ENST00000637110 WDR89Q96FK6 387 aaPredicted RBP8.78□□□□□ -1
CLN3-257ENST00000637110 BSCL2Q96G97 398 aaPredicted RBP8.78□□□□□ -1
CLN3-257ENST00000637110 PRRT1Q99946 306 aa8.78□□□□□ -1
CLN3-257ENST00000637110 MCUBQ9NWR8 336 aa8.78□□□□□ -1
CLN3-257ENST00000637110 TMEM213A2RRL7 107 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 ZNF785A8K8V0 405 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 B3GALNT1O75752 331 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 YIF1AO95070 293 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 OR5AC1P0C628 307 aa8.77□□□□□ -1.01
CLN3-257ENST00000637110 S100A5P33763 92 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms