RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-255ENST00000637100 RARRES2Q99969 163 aa12.03□□□□□ -0.48
CLN3-255ENST00000637100 RHPN1-AS1Q9BWJ2 59 aa12.03□□□□□ -0.48
CLN3-255ENST00000637100 C6orf62Q9GZU0 229 aaPredicted RBP12.03□□□□□ -0.48
CLN3-255ENST00000637100 TMEM14BQ9NUH8 114 aa12.03□□□□□ -0.48
CLN3-255ENST00000637100 I3L2K1 104 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 PRR20EP86478 221 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 PRR20CP86479 221 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 PRR20DP86480 221 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 PRR20BP86481 221 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 PRR20AP86496 221 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 ZNF124Q15973 351 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 AADACL3Q5VUY0 350 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 IZUMO2Q6UXV1 221 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 FCAMRQ8WWV6 532 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 FCGR1BQ92637 280 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 MOB3AQ96BX8 217 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 CNBD2Q96M20 576 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 C20orf24Q9BUV8 137 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 FAM212BQ9NTI7 297 aaPredicted RBP12.02□□□□□ -0.49
CLN3-255ENST00000637100 RAB26Q9ULW5 256 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 SSR3Q9UNL2 185 aa12.02□□□□□ -0.49
CLN3-255ENST00000637100 CLEC2LP0C7M8 214 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 NAT1P18440 290 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 LPAR6P43657 344 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 FXYD4P59646 89 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 RELQ04864 619 aaPredicted RBP12.01□□□□□ -0.49
CLN3-255ENST00000637100 ZNF114Q8NC26 417 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 TMEM116Q8NCL8 245 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 C11orf45Q8TAV5 145 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 NXF2Q9GZY0 626 aaKnown RBP12.01□□□□□ -0.49
CLN3-255ENST00000637100 VCX3BQ9H321 246 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 DIABLOQ9NR28 239 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 FKBP11Q9NYL4 201 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 OR51B2Q9Y5P1 312 aa12.01□□□□□ -0.49
CLN3-255ENST00000637100 IGHV3OR16-8A0A075B7F1 116 aa12□□□□□ -0.49
CLN3-255ENST00000637100 IGHV3-21A0A0B4J1V1 117 aa12□□□□□ -0.49
CLN3-255ENST00000637100 DBX1A6NMT0 343 aa12□□□□□ -0.49
CLN3-255ENST00000637100 ZNF207O43670 478 aaKnown RBP12□□□□□ -0.49
CLN3-255ENST00000637100 CD5P06127 495 aa12□□□□□ -0.49
CLN3-255ENST00000637100 NANOS2P60321 138 aaKnown RBP12□□□□□ -0.49
CLN3-255ENST00000637100 ERVK-16P61578 105 aa12□□□□□ -0.49
CLN3-255ENST00000637100 TMEM17Q86X19 198 aa12□□□□□ -0.49
CLN3-255ENST00000637100 TMEM56Q96MV1 263 aa12□□□□□ -0.49
CLN3-255ENST00000637100 VSIRQ9H7M9 311 aa12□□□□□ -0.49
CLN3-255ENST00000637100 PRNDQ9UKY0 176 aa12□□□□□ -0.49
CLN3-255ENST00000637100 APLNQ9ULZ1 77 aa12□□□□□ -0.49
CLN3-255ENST00000637100 TRAV2A0A0B4J234 112 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 C15orf61A6NNL5 157 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 XRCC3O43542 346 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 KRASP01116 189 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 PSMB9P28065 219 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 RBMS2Q15434 407 aaKnown RBP11.99□□□□□ -0.49
CLN3-255ENST00000637100 OR11H2Q8NH07 326 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 TSC22D3Q99576 134 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 YTHDF1Q9BYJ9 559 aaKnown RBP11.99□□□□□ -0.49
CLN3-255ENST00000637100 HRH4Q9H3N8 390 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 NSG2Q9Y328 171 aa11.99□□□□□ -0.49
CLN3-255ENST00000637100 TRAV14DV4A0A0A6YYC5 116 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 NUPL2O15504 423 aaKnown RBP11.98□□□□□ -0.49
CLN3-255ENST00000637100 SNAPC5O75971 98 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 DFFBO76075 338 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 RLN1P04808 185 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 IFNA4P05014 189 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 G6PCP35575 357 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 RFX2P48378 723 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 MFAP4P55083 255 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 Q56UQ5 140 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 PVRIGQ6DKI7 326 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 C2CD4CQ8TF44 421 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 RNF167Q9H6Y7 350 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 DNAH17Q9UFH2 4485 aa11.98□□□□□ -0.49
CLN3-255ENST00000637100 GIG44P09565 113 aaPredicted RBP11.97□□□□□ -0.49
CLN3-255ENST00000637100 HERV-K104P61576 105 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 IDNKQ5T6J7 187 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 LILRB2Q8N423 598 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 Q8NAQ8 132 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 SEC22AQ96IW7 307 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 HINT2Q9BX68 163 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 EHFQ9NZC4 300 aa11.97□□□□□ -0.49
CLN3-255ENST00000637100 C11orf94C9JXX5 98 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 GPR31O00270 319 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 MXD1Q05195 221 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 CMTM1Q8IZ96 169 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 UBAC2Q8NBM4 344 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 SLC25A46Q96AG3 418 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 ZNF2Q9BSG1 426 aaPredicted RBP11.96□□□□□ -0.49
CLN3-255ENST00000637100 FXYD6Q9H0Q3 95 aa11.96□□□□□ -0.49
CLN3-255ENST00000637100 FAT2Q9NYQ8 4349 aa11.96□□□□□ -0.5
CLN3-255ENST00000637100 INS-IGF2F8WCM5 200 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 MT-CO2P00403 227 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 IGKV1-39P01597 117 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 IGKV1D-39P04432 117 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 FCER2P06734 321 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 PAFAH1B2P68402 229 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 PRCDQ00LT1 54 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 TMEM187Q14656 261 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 TOMM20LQ6UXN7 152 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 TCF24Q7RTU0 167 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 LYSMD2Q8IV50 215 aa11.95□□□□□ -0.5
CLN3-255ENST00000637100 ZFAND3Q9H8U3 227 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms