RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 RASL12Q9NYN1 266 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 JPT1Q9UK76 154 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 FUT9Q9Y231 359 aa-0.91□□□□□ -2.56
SCN1A-211ENST00000635893 GOLGA8QA0A0J9YX86 632 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 DAPL1A0PJW8 107 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 C5orf49A4QMS7 147 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 LST1O00453 97 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 CSTAP01040 98 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 RIBC1Q8N443 379 aaPredicted RBP-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 OR52E4Q8NGH9 312 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 ANKRD36BP1Q96IX9 119 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 SERPINB11Q96P15 392 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 BCL7BQ9BQE9 202 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 GPR84Q9NQS5 396 aa-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 PAQR5Q9NXK6 330 aaPredicted RBP-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 RSL24D1Q9UHA3 163 aaKnown RBP-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 EP300Q09472 2414 aaPredicted RBP-0.92□□□□□ -2.56
SCN1A-211ENST00000635893 DOCK3Q8IZD9 2030 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 LYZL6O75951 148 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 UBL3O95164 117 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 OTCP00480 354 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 HTR1AP08908 422 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 MIFP14174 115 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 CD151P48509 253 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 TNNC1P63316 161 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 RHOGP84095 191 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 CLEC12BQ2HXU8 276 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 IBA57Q5T440 356 aaKnown RBP-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 SYPL2Q5VXT5 272 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 SBSNQ6UWP8 590 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 LINC00322Q6ZN03 302 aaPredicted RBP-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 OPTNQ96CV9 577 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 TSPAN32Q96QS1 320 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 TMEM147Q9BVK8 224 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 DCSTAMPQ9H295 470 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 NCOR1P1Q9H4R4 102 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 WDR54Q9H977 334 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 SPACA1Q9HBV2 294 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 ANAPC10Q9UM13 185 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 POFUT2Q9Y2G5 429 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 COL6A3P12111 3177 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 APC2O95996 2303 aa-0.93□□□□□ -2.56
SCN1A-211ENST00000635893 A0A1W2PP64 1363 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 SCN3AQ9NY46 2000 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 BSNQ9UPA5 3926 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 C1orf232A0A0U1RR37 186 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 SPINK1P00995 79 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 C1QAP02745 245 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 POLR2GP62487 172 aaKnown RBP eCLIP-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 RBM48Q5RL73 367 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 HAVCR2Q8TDQ0 301 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 ASCL3Q9NQ33 180 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 TMEM14CQ9P0S9 112 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 CKLFQ9UBR5 152 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 CFAP45Q9UL16 551 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 NCOR1O75376 2440 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 NUP153P49790 1475 aaKnown RBP-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 ZDBF2Q9HCK1 2354 aa-0.94□□□□□ -2.56
SCN1A-211ENST00000635893 PTPRQQ9UMZ3 2332 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 TRAV12-1A0A0B4J245 112 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 TLCD2A6NGC4 264 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 FABP5P3A8MUU1 101 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 NOS1APO75052 506 aaPredicted RBP-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 ZNF682O95780 498 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 IL6P05231 212 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 FGF6P10767 208 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 EBPQ15125 230 aaKnown RBP-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 DEFB113Q30KQ7 82 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 SPANXN5Q5MJ07 72 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 DEFB128Q7Z7B8 93 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 UBL4BQ8N7F7 174 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 PLPP5Q8NEB5 264 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 OR2T4Q8NH00 348 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 SLC37A2Q8TED4 501 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 TIPINQ9BVW5 301 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 IL36BQ9NZH7 164 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 ACANP16112 2415 aa-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 FLGP20930 4061 aaPredicted RBP-0.95□□□□□ -2.56
SCN1A-211ENST00000635893 ALMS1Q8TCU4 4167 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 TEX50A0A1B0GTY4 177 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 CCL2P13500 99 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 FOXA3P55318 350 aaPredicted RBP-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 TNFAIP6P98066 277 aaPredicted RBP-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 LRRC26Q2I0M4 334 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 ST13P4Q8IZP2 240 aaPredicted RBP-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 C3orf56Q8N813 242 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 OR5AK3PQ8NH89 298 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 LRRC20Q8TCA0 184 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 ZC2HC1AQ96GY0 325 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 ULBP3Q9BZM4 244 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 HES4Q9HCC6 221 aa-0.96□□□□□ -2.56
SCN1A-211ENST00000635893 SONP18583 2426 aaKnown RBP-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 MAST2Q6P0Q8 1798 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 NUPR2A6NF83 97 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 TCL1BO95988 128 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 REG1AP05451 166 aa-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 SRP19P09132 144 aaKnown RBP-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 MGST1P10620 155 aaKnown RBP-0.97□□□□□ -2.56
SCN1A-211ENST00000635893 QRFPP83859 136 aa-0.97□□□□□ -2.56
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms