RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 GCSAMLQ5JQS6 135 aa12.77□□□□□ -0.37
CPSF1-213ENST00000620219 PRRC2AP48634 2157 aaKnown RBP12.77□□□□□ -0.37
CPSF1-213ENST00000620219 TANC2Q9HCD6 1990 aa12.77□□□□□ -0.37
CPSF1-213ENST00000620219 NUDT19A8MXV4 375 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 LYZP61626 148 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 CLEC12BQ2HXU8 276 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 TMEM41BQ5BJD5 291 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 PPP1R27Q86WC6 154 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 NANPQ8TBE9 248 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 SH2D7A6NKC9 451 aaPredicted RBP12.76□□□□□ -0.37
CPSF1-213ENST00000620219 HAPLN4Q86UW8 402 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 ZNF843Q8N446 348 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 CYB561D1Q8N8Q1 229 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 SLC35B3Q9H1N7 401 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 TPSG1Q9NRR2 321 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 SMG1Q96Q15 3661 aaKnown RBP12.76□□□□□ -0.37
CPSF1-213ENST00000620219 IGHV4-39P01824 125 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 OR2T10Q8NGZ9 312 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 FLNCQ14315 2725 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 IGFBP2P18065 325 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 OR2T6Q8NHC8 308 aa12.76□□□□□ -0.37
CPSF1-213ENST00000620219 RCC1LQ96I51 464 aaKnown RBP12.76□□□□□ -0.37
CPSF1-213ENST00000620219 MOSP00540 346 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 HSPB1P04792 205 aaKnown RBP12.75□□□□□ -0.37
CPSF1-213ENST00000620219 TAGLN2P37802 199 aaKnown RBP12.75□□□□□ -0.37
CPSF1-213ENST00000620219 LRRC75BQ2VPJ9 315 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 RAB24Q969Q5 203 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 MS4A10Q96PG2 267 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 NPCDR1Q9BY65 106 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 SCGB2A1O75556 95 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 ADCYAP1P18509 176 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 SERF2P84101 59 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 AWAT1Q58HT5 328 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 KHDC1LQ5JSQ8 128 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 TMEM219Q86XT9 240 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 OR4X1Q8NH49 305 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 SMIM7Q9BQ49 75 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 MTORP42345 2549 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 ACANP16112 2415 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 PAGE4O60829 102 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 NCOR1P1Q9H4R4 102 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 LINC00527Q9UJ94 153 aa12.75□□□□□ -0.37
CPSF1-213ENST00000620219 IGHV3-23P01764 117 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 BLNKQ8WV28 456 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 AURKAIP1Q9NWT8 199 aaPredicted RBP12.74□□□□□ -0.37
CPSF1-213ENST00000620219 PRTN3P24158 256 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 TPTE2P1Q5T6R2 138 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 C2CD4CQ8TF44 421 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 ANKRD17O75179 2603 aaKnown RBP12.74□□□□□ -0.37
CPSF1-213ENST00000620219 OR10J4P0C629 311 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 RUSC1-AS1Q66K80 236 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 C19orf35Q6ZS72 473 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 SRSF12Q8WXF0 261 aaKnown RBP12.74□□□□□ -0.37
CPSF1-213ENST00000620219 HIF1ANQ9NWT6 349 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 RHOBP62745 196 aa12.74□□□□□ -0.37
CPSF1-213ENST00000620219 GNG7O60262 68 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 S100A6P06703 90 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 CGB3P0DN86 165 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 CGB7P0DN87 165 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 KLF17Q5JT82 389 aaPredicted RBP12.73□□□□□ -0.37
CPSF1-213ENST00000620219 SLC16A13Q7RTY0 426 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 DTX2Q86UW9 622 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 CLRN3Q8NCR9 226 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 SEC11CQ9BY50 192 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 LINC00869P0C866 280 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 PRCDQ00LT1 54 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 PSG5Q15238 335 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 UNQ5815/PRO19632Q6UWF5 114 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 SAV1Q9H4B6 383 aaPredicted RBP12.73□□□□□ -0.37
CPSF1-213ENST00000620219 C15orf62A8K5M9 175 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 TMEM14EPQ6UXP3 125 aa12.73□□□□□ -0.37
CPSF1-213ENST00000620219 IGHV3OR16-8A0A075B7F1 116 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ITGB1BP1O14713 200 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 NBR2O15453 112 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ZFP36P26651 326 aaKnown RBP12.72□□□□□ -0.37
CPSF1-213ENST00000620219 TAS2R45P59539 299 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 BPIFB3P59826 476 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ETFRF1Q6IPR1 90 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ZNF833PQ6ZTB9 187 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ZNF429Q86V71 674 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 TNFRSF14Q92956 283 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 SERTAD4Q9NUC0 356 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 BET1LQ9NYM9 111 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 CTXND1A0A1B0GTU2 59 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 A0A1B0GWJ7 208 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 SAA4P35542 130 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 IGHV4-61A0A0C4DH41 118 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 EIF4E3Q8N5X7 224 aaKnown RBP12.72□□□□□ -0.37
CPSF1-213ENST00000620219 STPG3Q8N7X2 389 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 RITA1Q96K30 269 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 UHRF2Q96PU4 802 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 RNF223E7ERA6 249 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 RHEBQ15382 184 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ODF3L1Q8IXM7 274 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 NECAP1Q8NC96 275 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 ZNF439Q8NDP4 499 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 OR5AN1Q8NGI8 311 aa12.72□□□□□ -0.37
CPSF1-213ENST00000620219 SRP14P37108 136 aaKnown RBP12.71□□□□□ -0.37
CPSF1-213ENST00000620219 HIST2H2BCQ6DN03 193 aa12.71□□□□□ -0.37
CPSF1-213ENST00000620219 ZNF295-AS1Q8N0V1 137 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms