RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 RPL37AP8A6NKH3 93 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 A8MT66 165 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 LEUTXA8MZ59 168 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 HMGN4O00479 90 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 GABRPO00591 440 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 BHLHE40O14503 412 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 IDH3BO43837 385 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 PTTG1O95997 202 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 SERPINA1P01009 418 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 IGHV3-11P01762 117 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 HSPB1P04792 205 aaKnown RBP3.02□□□□□ -1.93
LINC00540-201ENST00000611481 RBP1P09455 135 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 LIMS3P0CW19 117 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 LIMS4P0CW20 117 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF728P0DKX0 622 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 GNB3P16520 340 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 CAV2P51636 162 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 OR10A3P58181 314 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 TAS2R31P59538 309 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 NUTF2P61970 127 aaKnown RBP3.02□□□□□ -1.93
LINC00540-201ENST00000611481 RPL38P63173 70 aaKnown RBP3.02□□□□□ -1.93
LINC00540-201ENST00000611481 MXD1Q05195 221 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 CKAP4Q07065 602 aaKnown RBP3.02□□□□□ -1.93
LINC00540-201ENST00000611481 TRAM1Q15629 374 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 LRRC36Q1X8D7 754 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 RFX4Q33E94 735 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 AKIRIN2Q53H80 203 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 ACTBL2Q562R1 376 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 GCSAMLQ5JQS6 135 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 OR10J3Q5JRS4 329 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 PAGE3Q5JUK9 113 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 ADAMTSL4-AS1Q5T5F5 129 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 IL34Q6ZMJ4 242 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 MRPL55Q7Z7F7 128 aaKnown RBP3.02□□□□□ -1.93
LINC00540-201ENST00000611481 CALHM1Q8IU99 346 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 CTAGE3PQ8IX95 158 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 CLECL1Q8IZS7 167 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 HS3ST5Q8IZT8 346 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 CBR4Q8N4T8 237 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF676Q8N7Q3 588 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 OR51E1Q8TCB6 317 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 MAGOHBQ96A72 148 aaKnown RBP3.02□□□□□ -1.93
LINC00540-201ENST00000611481 PTH2Q96A98 100 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF488Q96MN9 340 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 RASL11BQ9BPW5 248 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 PDCD1LG2Q9BQ51 273 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 FKBP14Q9NWM8 211 aa3.02□□□□□ -1.93
LINC00540-201ENST00000611481 IGHV1OR15-1A0A075B7D0 117 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 TRAV10A0A0B4J240 114 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 IGHV3-16A0A0C4DH30 117 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 A0A0U1RQV1 116 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 A0A1W2PQL4 384 aaPredicted RBP3.01□□□□□ -1.93
LINC00540-201ENST00000611481 GMNCA6NCL1 334 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ARRDC5A6NEK1 342 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 FAM183AA6NL82 134 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 G3V318 75 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 AGPAT2O15120 278 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 MAGEB4O15481 346 aaPredicted RBP3.01□□□□□ -1.93
LINC00540-201ENST00000611481 DENRO43583 198 aaKnown RBP3.01□□□□□ -1.93
LINC00540-201ENST00000611481 MPZL2O60487 215 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 IGKV1D-33P01593 117 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 IGKV1-33P01594 117 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 C1QCP02747 245 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 RBP4P02753 201 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 CD74P04233 296 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 C8orf88P0DMB2 117 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 OR5H8P0DN80 308 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 PSG2P11465 335 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 CTLA4P16410 223 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 PVALBP20472 110 aaPredicted RBP3.01□□□□□ -1.93
LINC00540-201ENST00000611481 F2RP25116 425 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 CD34P28906 385 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 PFN2P35080 140 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 APOC4P55056 127 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 SELENOTP62341 195 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 MLLT11Q13015 90 aaPredicted RBP3.01□□□□□ -1.93
LINC00540-201ENST00000611481 SMUG1Q53HV7 270 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF506Q5JVG8 444 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 LPCAT4Q643R3 524 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 EPGNQ6UW88 154 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF561Q8N587 486 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 C15orf53Q8NAA6 179 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 AQP11Q8NBQ7 271 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 OR51S1Q8NGJ8 323 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 OR51G1Q8NGK1 321 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 OR2AE1Q8NHA4 323 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ENKURQ8TC29 256 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ZFAND1Q8TCF1 268 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 CASTOR1Q8WTX7 329 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 FGGYQ96C11 551 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 FCRL1Q96LA6 429 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 HSPB9Q9BQS6 159 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 CHCHD5Q9BSY4 110 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 CCDC28BQ9BUN5 200 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 MRPS26Q9BYN8 205 aaKnown RBP3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ABCG5Q9H222 651 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 TMEM133Q9H2Q1 129 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 XCL2Q9UBD3 114 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF222Q9UK12 451 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 PYCARDQ9ULZ3 195 aa3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms