RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 AKR1C2P52895 323 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 HSPE1P61604 102 aaKnown RBP12.37□□□□□ -0.43
LSM4-206ENST00000600289 RPEL1Q2QD12 228 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 TRIM16LQ309B1 348 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 SP6Q3SY56 376 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 AARDQ4LEZ3 155 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 FAM219AQ8IW50 185 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 ZNF114Q8NC26 417 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 OR9G4Q8NGQ1 327 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 VN1R17PQ8TDU5 208 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 TMEM230Q96A57 120 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 CCDC140Q96MF4 163 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 WWC2-AS2Q96NR7 200 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 ATP6V0BQ99437 205 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 SIGLEC8Q9NYZ4 499 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 TENM2Q9NT68 2774 aa12.37□□□□□ -0.43
LSM4-206ENST00000600289 DCTN2Q13561 401 aaKnown RBP12.36□□□□□ -0.43
LSM4-206ENST00000600289 TATDN3Q17R31 274 aa12.36□□□□□ -0.43
LSM4-206ENST00000600289 SGPP2Q8IWX5 399 aa12.36□□□□□ -0.43
LSM4-206ENST00000600289 LHFPL5Q8TAF8 219 aa12.36□□□□□ -0.43
LSM4-206ENST00000600289 RBPMSQ93062 196 aaKnown RBP12.36□□□□□ -0.43
LSM4-206ENST00000600289 IL22RA2Q969J5 263 aa12.36□□□□□ -0.43
LSM4-206ENST00000600289 TMEM56-RWDD3S4R434 201 aa12.36□□□□□ -0.43
LSM4-206ENST00000600289 A0A0B4J293 547 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 GGCTO75223 188 aaKnown RBP12.35□□□□□ -0.43
LSM4-206ENST00000600289 MFAP2P55001 183 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 IL34Q6ZMJ4 242 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 LINC00299Q6ZSB3 139 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 OR2C3Q8N628 320 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 OR1P1Q8NH06 330 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 ZNF502Q8TBZ5 544 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 RRNAD1Q96FB5 475 aaKnown RBP12.35□□□□□ -0.43
LSM4-206ENST00000600289 OR4C12Q96R67 309 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 SLC25A21Q9BQT8 299 aaPredicted RBP12.35□□□□□ -0.43
LSM4-206ENST00000600289 HINT2Q9BX68 163 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 ZNF256Q9Y2P7 627 aaPredicted RBP12.35□□□□□ -0.43
LSM4-206ENST00000600289 DNAH1Q9P2D7 4330 aa12.35□□□□□ -0.43
LSM4-206ENST00000600289 HYDINQ4G0P3 5121 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 MFSD2BA6NFX1 497 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 IGLV1-51P01701 117 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 MECP2P51608 486 aaKnown RBP12.34□□□□□ -0.43
LSM4-206ENST00000600289 SYNJ2BPP57105 145 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 SUPT4H1P63272 117 aaKnown RBP12.34□□□□□ -0.43
LSM4-206ENST00000600289 GPHB5Q86YW7 130 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 SELENOHQ8IZQ5 122 aaKnown RBP12.34□□□□□ -0.43
LSM4-206ENST00000600289 SDHCQ99643 169 aaPredicted RBP12.34□□□□□ -0.43
LSM4-206ENST00000600289 LYSTQ99698 3801 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 PEMTQ9UBM1 199 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 KCNIP3Q9Y2W7 256 aa12.34□□□□□ -0.43
LSM4-206ENST00000600289 PIGBOS1A0A0B4J2F0 54 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 A0A0G2JRQ6 117 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 NAP1L6A6NFF2 107 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 PPP5D1E7EU14 171 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 LGALS9O00182 355 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 ST8SIA3O43173 380 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 ARL3P36405 182 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 TMEM187Q14656 261 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 BAK1Q16611 211 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 IZUMO4Q1ZYL8 232 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 TRIQKQ629K1 86 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 CLEC19AQ6UXS0 136 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 OR52E5Q8NH55 327 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 PLEKHA3Q9HB20 300 aa12.33□□□□□ -0.44
LSM4-206ENST00000600289 CSN3P07498 182 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 ANXA3P12429 323 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 SRPXP78539 464 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 TMEM268Q5VZI3 342 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 ZNF57Q68EA5 555 aaPredicted RBP12.32□□□□□ -0.44
LSM4-206ENST00000600289 SLC25A24Q6NUK1 477 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 PDCD10Q9BUL8 212 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 CACFD1Q9UGQ2 172 aa12.32□□□□□ -0.44
LSM4-206ENST00000600289 SORL1Q92673 2214 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 A0A0B4J2A0 478 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 A6NHS1 94 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 A8MWP6 167 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 K7EIM0 57 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 IGHV3-23P01764 117 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 AKR1C4P17516 323 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 FCGR2BP31994 310 aaPredicted RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 ERHP84090 104 aaKnown RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 RBMS2Q15434 407 aaKnown RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 TMEM128Q5BJH2 165 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 PVRIGQ6DKI7 326 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 Q6ZRM9 215 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 SLC35G3Q8N808 338 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 RNASE11Q8TAA1 199 aaKnown RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 C7orf50Q9BRJ6 194 aaKnown RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 SHPKQ9UHJ6 478 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 LSM4Q9Y4Z0 139 aaKnown RBP12.31□□□□□ -0.44
LSM4-206ENST00000600289 S4R3C0 116 aa12.31□□□□□ -0.44
LSM4-206ENST00000600289 HLA-AP01891 365 aaKnown RBP12.3□□□□□ -0.44
LSM4-206ENST00000600289 CLEC3BP05452 202 aa12.3□□□□□ -0.44
LSM4-206ENST00000600289 INPP1P49441 399 aa12.3□□□□□ -0.44
LSM4-206ENST00000600289 SPCS3P61009 180 aa12.3□□□□□ -0.44
LSM4-206ENST00000600289 SPSB3Q6PJ21 355 aa12.3□□□□□ -0.44
LSM4-206ENST00000600289 OR2K2Q8NGT1 345 aa12.3□□□□□ -0.44
LSM4-206ENST00000600289 SCARB1Q8WTV0 552 aa12.3□□□□□ -0.44
LSM4-206ENST00000600289 BSCL2Q96G97 398 aaPredicted RBP12.3□□□□□ -0.44
LSM4-206ENST00000600289 PRR25Q96S07 402 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms