RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 Q6ZS92 163 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 AKIRIN1Q9H9L7 192 aaPredicted RBP17.14■□□□□ 0.33
UPF1-207ENST00000599848 OR5AC2Q9NZP5 309 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 JKAMPQ9P055 326 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 A0A087WX48 190 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 KLK2P20151 261 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 GCSAMLQ5JQS6 135 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 TMEM144Q7Z5S9 345 aa17.14■□□□□ 0.33
UPF1-207ENST00000599848 LINC00587B1AMM8 73 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 IFI27P40305 119 aaPredicted RBP17.13■□□□□ 0.33
UPF1-207ENST00000599848 PKIAP61925 76 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 FAM201AQ5SY85 155 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 A0A0G2JK05 382 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 PEX7O00628 323 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 CD7P09564 240 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 RNF125Q96EQ8 232 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 MRPL18Q9H0U6 180 aaKnown RBP17.13■□□□□ 0.33
UPF1-207ENST00000599848 TOMM7Q9P0U1 55 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 SPRR3Q9UBC9 169 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 A0A1B0GUT8 65 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 ZNHIT1O43257 154 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 IGHV1-46P01743 117 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 SLC25A38Q96DW6 304 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 KLK15Q9H2R5 256 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 PLA2G10O15496 165 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 AGAP20933 346 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 FOXB2Q5VYV0 432 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 FER1L6-AS1Q8NA97 138 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 VN1R17PQ8TDU5 208 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 PPP1R3EQ9H7J1 279 aa17.13■□□□□ 0.33
UPF1-207ENST00000599848 IGHV3-66A0A0C4DH42 116 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 C15orf61A6NNL5 157 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 SAA1P0DJI8 122 aaPredicted RBP17.12■□□□□ 0.33
UPF1-207ENST00000599848 CXCL3P19876 107 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 OR11H7Q8NGC8 314 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 COL11A2P13942 1736 aaPredicted RBP17.12■□□□□ 0.33
UPF1-207ENST00000599848 NR2C2APQ86WQ0 139 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 C9orf62Q8N4C0 152 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 SCGB3A1Q96QR1 104 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 KIAA1217Q5T5P2 1943 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 ST20Q9HBF5 79 aa17.12■□□□□ 0.33
UPF1-207ENST00000599848 CCL3L1P16619 93 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 K7ENP7 123 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 OR10S1Q8NGN2 331 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 C5orf66Q9H5L9 145 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 WFIKKN1Q96NZ8 548 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 PCM1Q15154 2024 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 TIMM23O14925 209 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 TMEM155Q4W5P6 130 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 TMEM86BQ8N661 226 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 NEUROG1Q92886 237 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 WBP1Q96G27 269 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 NPCDR1Q9BY65 106 aa17.11■□□□□ 0.33
UPF1-207ENST00000599848 RAMP1O60894 148 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 OR10J3Q5JRS4 329 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 SCN10AQ9Y5Y9 1956 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 TRBV7-9A0A0J9YWB2 115 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 MBD3L4A6NDZ8 208 aaPredicted RBP17.1■□□□□ 0.33
UPF1-207ENST00000599848 MBD3L3A6NE82 208 aaPredicted RBP17.1■□□□□ 0.33
UPF1-207ENST00000599848 MBD3L5A6NJ08 208 aaPredicted RBP17.1■□□□□ 0.33
UPF1-207ENST00000599848 STAG3L3P0CL85 134 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 SMIM6P0DI80 62 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 CENPWQ5EE01 88 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 SLC25A34Q6PIV7 304 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 MBD3L2Q8NHZ7 208 aaPredicted RBP17.1■□□□□ 0.33
UPF1-207ENST00000599848 SAA2-SAA4A0A096LPE2 208 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 H3BTX0 84 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 SAA2P0DJI9 122 aaPredicted RBP17.1■□□□□ 0.33
UPF1-207ENST00000599848 EGR1P18146 543 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 IFT22Q9H7X7 185 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 TRAV9-1A0A075B6T8 112 aa17.1■□□□□ 0.33
UPF1-207ENST00000599848 C7orf71A4D174 169 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 PGPEP1Q9NXJ5 209 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 STRCP1A6NGW2 1772 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 PRCDQ00LT1 54 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 ISOC2Q96AB3 205 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 AMBPP02760 352 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 FAM169BQ8N8A8 192 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 CHCHD5Q9BSY4 110 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 ZNF585BQ52M93 769 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 VMO1Q7Z5L0 202 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 SFRP2Q96HF1 295 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 ZNF414Q96IQ9 312 aa17.09■□□□□ 0.33
UPF1-207ENST00000599848 MRPL13Q9BYD1 178 aaKnown RBP17.09■□□□□ 0.33
UPF1-207ENST00000599848 VCX2Q9H322 139 aa17.08■□□□□ 0.33
UPF1-207ENST00000599848 H0YL77 283 aa17.08■□□□□ 0.33
UPF1-207ENST00000599848 AICDAQ9GZX7 198 aa17.08■□□□□ 0.33
UPF1-207ENST00000599848 C17orf98A8MV24 154 aa17.08■□□□□ 0.32
UPF1-207ENST00000599848 CELA3BP08861 270 aa17.08■□□□□ 0.32
UPF1-207ENST00000599848 EP300Q09472 2414 aaPredicted RBP17.08■□□□□ 0.32
UPF1-207ENST00000599848 TRBV7-1A0A0A6YYK4 115 aa17.08■□□□□ 0.32
UPF1-207ENST00000599848 ZNF415Q09FC8 603 aa17.08■□□□□ 0.32
UPF1-207ENST00000599848 HSPB9Q9BQS6 159 aa17.08■□□□□ 0.32
UPF1-207ENST00000599848 RPP21Q9H633 154 aaKnown RBP17.08■□□□□ 0.32
UPF1-207ENST00000599848 J3QLI3 93 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 CD8AP01732 235 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 MORN2Q502X0 79 aa17.07■□□□□ 0.32
UPF1-207ENST00000599848 TRAF4Q9BUZ4 470 aaPredicted RBP17.07■□□□□ 0.32
UPF1-207ENST00000599848 POLR2AP24928 1970 aaKnown RBP17.07■□□□□ 0.32
UPF1-207ENST00000599848 TRBV6-7A0A0A0MS04 114 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms