RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 SLC25A6P12236 298 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 RUNX1Q01196 453 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 SMCO1Q147U7 214 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 C8orf86Q6ZUL3 223 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 REC114Q7Z4M0 266 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 C1QL4Q86Z23 238 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 OR52E5Q8NH55 327 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 FANCD2OSQ96PS1 177 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 PDCD10Q9BUL8 212 aa14.09□□□□□ -0.15
LIG1-216ENST00000598938 IGLV11-55A0A075B6I3 123 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 A0A0G2JLM5 398 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 FAM223BA6NKX1 122 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 I3L521 148 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 IL5P05113 134 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 HOXB5P09067 269 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 SPCS3P61009 180 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 RHOGP84095 191 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 GGNBP1Q5YKI7 109 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 PLET1Q6UQ28 207 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 ETV3LQ6ZN32 361 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 FAM223AQ8IWN6 122 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 MRPL41Q8IXM3 137 aaKnown RBP14.08□□□□□ -0.16
LIG1-216ENST00000598938 ZNF431Q8TF32 576 aaPredicted RBP14.08□□□□□ -0.16
LIG1-216ENST00000598938 USMG5Q96IX5 58 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 SEC22CQ9BRL7 303 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 MARVELD1Q9BSK0 173 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 PLEKHA3Q9HB20 300 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 CACFD1Q9UGQ2 172 aa14.08□□□□□ -0.16
LIG1-216ENST00000598938 ADAP1O75689 374 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 LGALS1P09382 135 aaKnown RBP14.07□□□□□ -0.16
LIG1-216ENST00000598938 DEFA4P12838 97 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 HIST1H1BP16401 226 aaKnown RBP14.07□□□□□ -0.16
LIG1-216ENST00000598938 DEFA5Q01523 94 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 BEAN1Q3B7T3 259 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 SPINK9Q5DT21 86 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 KPRPQ5T749 579 aaPredicted RBP14.07□□□□□ -0.16
LIG1-216ENST00000598938 OR2C3Q8N628 320 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 NECAP1Q8NC96 275 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 DMRT1Q9Y5R6 373 aa14.07□□□□□ -0.16
LIG1-216ENST00000598938 F11RQ9Y624 299 aaKnown RBP14.07□□□□□ -0.16
LIG1-216ENST00000598938 C13orf42A0A1B0GVH6 325 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 PITX3O75364 302 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 OR2J3O76001 311 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 PTTG1O95997 202 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 IGHV3-11P01762 117 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 SPNP16150 400 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 DEFB136Q30KP8 78 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 ZNF114Q8NC26 417 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 RAX2Q96IS3 184 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 OR5B12Q96R08 314 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 P2RX4Q99571 388 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 HSPB7Q9UBY9 170 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 NBEAL2Q6ZNJ1 2754 aa14.06□□□□□ -0.16
LIG1-216ENST00000598938 INMT-MINDY4F8WBC2 141 aa14.05□□□□□ -0.16
LIG1-216ENST00000598938 HOXA1P49639 335 aaPredicted RBP14.05□□□□□ -0.16
LIG1-216ENST00000598938 MFAP2P55001 183 aa14.05□□□□□ -0.16
LIG1-216ENST00000598938 ERHP84090 104 aaKnown RBP14.05□□□□□ -0.16
LIG1-216ENST00000598938 TNFRSF9Q07011 255 aa14.05□□□□□ -0.16
LIG1-216ENST00000598938 OR1P1Q8NH06 330 aa14.05□□□□□ -0.16
LIG1-216ENST00000598938 OR1S1Q8NH92 325 aa14.05□□□□□ -0.16
LIG1-216ENST00000598938 FBXL7Q9UJT9 491 aa14.05□□□□□ -0.16
LIG1-216ENST00000598938 CCL24O00175 119 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 CYB5BO43169 146 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 PRAF2O60831 178 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 NDUFB8O95169 186 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 IFNA21P01568 189 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 MYCNOSP40205 109 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 ATP5G2Q06055 141 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 DCTN2Q13561 401 aaKnown RBP14.04□□□□□ -0.16
LIG1-216ENST00000598938 FHL3Q13643 280 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 C15orf32Q32M92 178 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 ZNF343Q6P1L6 599 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 C12orf45Q8N5I9 185 aaPredicted RBP14.04□□□□□ -0.16
LIG1-216ENST00000598938 OR1L6Q8NGR2 347 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 DUX3Q96PT4 197 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 ENY2Q9NPA8 101 aa14.04□□□□□ -0.16
LIG1-216ENST00000598938 MPTX1A8MV57 137 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 NXPH3O95157 252 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 PF4P02776 101 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 EXOSC2Q13868 293 aaKnown RBP14.03□□□□□ -0.16
LIG1-216ENST00000598938 SAMD5Q5TGI4 173 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 SLC25A24Q6NUK1 477 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 OR11H1Q8NG94 326 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 THYN1Q9P016 225 aa14.03□□□□□ -0.16
LIG1-216ENST00000598938 CEBPZOSA8MTT3 80 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 SNRPGP15A8MWD9 76 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 FAM90A26D6RGX4 464 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 RNASE2P10153 161 aaKnown RBP14.02□□□□□ -0.17
LIG1-216ENST00000598938 ZNF616Q08AN1 781 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 BSXQ3C1V8 233 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 LINC00482Q8N8I6 264 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 OR1N2Q8NGR9 330 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 RBKSQ9H477 322 aa14.02□□□□□ -0.17
LIG1-216ENST00000598938 GPN1Q9HCN4 374 aaPredicted RBP14.02□□□□□ -0.17
LIG1-216ENST00000598938 IGHV4OR15-8A0A075B7B6 117 aa14.01□□□□□ -0.17
LIG1-216ENST00000598938 A0A087WW49 117 aa14.01□□□□□ -0.17
LIG1-216ENST00000598938 HSPB1P04792 205 aaKnown RBP14.01□□□□□ -0.17
LIG1-216ENST00000598938 SNCAP37840 140 aa14.01□□□□□ -0.17
LIG1-216ENST00000598938 PVRIGQ6DKI7 326 aa14.01□□□□□ -0.17
LIG1-216ENST00000598938 HEYLQ9NQ87 328 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms