RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 C8orf88P0DMB2 117 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 DEFB130BP0DP73 79 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 DEFB130AP0DP74 79 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 P2RY1P47900 373 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 DYNLT3P51808 116 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM50BP56557 158 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 PKIAP61925 76 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 PPP1R1AQ13522 171 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 KIAA0141Q14154 515 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 IQCJQ1A5X6 159 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 LINC00303Q3SY05 128 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM42Q69YG0 159 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 TCF23Q7RTU1 214 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 LRRC75A-AS1Q8N1F1 130 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 CIARTQ8N365 385 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 OR13C6PQ8NH95 151 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 GATAD1Q8WUU5 269 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 DLX4Q92988 240 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 HDHD3Q9BSH5 251 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 MAP1LC3CQ9BXW4 147 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 TOMM7Q9P0U1 55 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 RCC2Q9P258 522 aaKnown RBP2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 SMAD5-AS1Q9Y6J3 95 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 PRUNE2Q8WUY3 3088 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 LRRK2Q5S007 2527 aa2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 COL11A1P12107 1806 aaPredicted RBP2.44□□□□□ -2.02
SMCHD1-203ENST00000577880 C9orf170A2RU37 121 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 CLPSL1A2RUU4 121 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 FBLL1A6NHQ2 334 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 YPEL1O60688 119 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 OR2C1O95371 312 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 INSP01308 110 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 SNRPCP09234 159 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 CD7P09564 240 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 LINC00271P0C7V0 271 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 JUNBP17275 347 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 FSTP19883 344 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 RNASE4P34096 147 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 NMUP48645 174 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 PSMB2P49721 201 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 SYNJ2BPP57105 145 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TAS2R60P59551 318 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 RAB32Q13637 225 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 EFNB3Q15768 340 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C2orf83Q53S99 150 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM255AQ5JRV8 349 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 RUSC1-AS1Q66K80 236 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 LRRC75AQ8NAA5 344 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 OR4C5Q8NGB2 326 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 OR10C1Q96KK4 312 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 UBE2E2Q96LR5 201 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 YPEL2Q96QA6 119 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C2orf88Q9BSF0 95 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TMEM204Q9BSN7 226 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 LPAR5Q9H1C0 372 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TRBV7-1A0A0A6YYK4 115 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 CTXND1A0A1B0GTU2 59 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C7orf66A4D0T2 115 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM223BA6NKX1 122 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C11orf94C9JXX5 98 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 FOSL1P15407 271 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 RPL35P42766 123 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 HNRNPA3P51991 378 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TIAL1Q01085 375 aaKnown RBP eCLIP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 SRSF9Q13242 221 aaKnown RBP eCLIP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C11orf91Q3C1V1 193 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 PVRIGQ6DKI7 326 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM223AQ8IWN6 122 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 OR11H1Q8NG94 326 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 RNASEH2CQ8TDP1 164 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 IFI27L2Q9H2X8 130 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 NXT2Q9NPJ8 142 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 DCAF16Q9NXF7 216 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 SCN2AQ99250 2005 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 IGKV1D-42A0A075B6H8 117 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TRGV1A0A0A0MS02 117 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C15orf61A6NNL5 157 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TGFBR3LH3BV60 316 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 M0R381 172 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 SRSF10O75494 262 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 PGLYRP1O75594 196 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 EIF3GO75821 320 aaKnown RBP eCLIP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 IGHV3-48P01763 117 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 CFHR2P36980 270 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 CDX1P47902 265 aaPredicted RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 CD81P60033 236 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 GUK1Q16774 197 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C5orf64Q2M2E5 130 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C15orf32Q32M92 178 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 ACTL10Q5JWF8 245 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 FAM122BQ7Z309 247 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 OR10G8Q8NGN5 311 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 ZNF502Q8TBZ5 544 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 C2CD4CQ8TF44 421 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 TAF15Q92804 592 aaKnown RBP eCLIP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 MRPL32Q9BYC8 188 aaKnown RBP2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 KCNE5Q9UJ90 142 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 VPREB3Q9UKI3 123 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 HIVEP3Q5T1R4 2406 aa2.43□□□□□ -2.02
SMCHD1-203ENST00000577880 DOCK5Q9H7D0 1870 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms