RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 SEPSECSQ9HD40 501 aaKnown RBP8.21□□□□□ -1.09
VPS53-220ENST00000576149 TMEM106BQ9NUM4 274 aa8.21□□□□□ -1.09
VPS53-220ENST00000576149 CUL9Q8IWT3 2517 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 ELOA3CA0A087WX78 387 aaPredicted RBP8.21□□□□□ -1.1
VPS53-220ENST00000576149 H0YJW9 148 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 IGFBP2P18065 325 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 RHOBP62745 196 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 LYPD2Q6UXB3 125 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 OR5AN1Q8NGI8 311 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 OR5B3Q8NH48 314 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 DERL1Q9BUN8 251 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 ELOVL1Q9BW60 279 aa8.21□□□□□ -1.1
VPS53-220ENST00000576149 GAR1Q9NY12 217 aaKnown RBP8.21□□□□□ -1.1
VPS53-220ENST00000576149 SHISA9B4DS77 424 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 PPP1R2P9O14990 202 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 NDUFB3O43676 98 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 APOA2P02652 100 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 LINC00869P0C866 280 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 FOXC1Q12948 553 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 C4orf17Q53FE4 359 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 C2orf83Q53S99 150 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 HIST3H2BBQ8N257 126 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 OR4X1Q8NH49 305 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 LRFN3Q9BTN0 628 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 NGBQ9NPG2 151 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 SLC45A2Q9UMX9 530 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 GVINP1Q7Z2Y8 2422 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 CEP250Q9BV73 2442 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 RP1L1Q8IWN7 2480 aaPredicted RBP8.2□□□□□ -1.1
VPS53-220ENST00000576149 E7EQL1 145 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 K7ENP7 123 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 FABP1P07148 127 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 SOD3P08294 240 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 CD99P14209 185 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 S100A2P29034 98 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 GCHFRP30047 84 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 SRP14P37108 136 aaKnown RBP8.2□□□□□ -1.1
VPS53-220ENST00000576149 TMEM177Q53S58 311 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 LRRC10Q5BKY1 277 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 GFI1BQ5VTD9 330 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 SPATA31B1PQ5VZV4 182 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 CYB5R2Q6BCY4 276 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 TMEM144Q7Z5S9 345 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 DMRTC2Q8IXT2 367 aaPredicted RBP8.2□□□□□ -1.1
VPS53-220ENST00000576149 C8orf31Q8N9H6 132 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 ZNF596Q8TC21 504 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 H1FXQ92522 213 aaKnown RBP8.2□□□□□ -1.1
VPS53-220ENST00000576149 HARBI1Q96MB7 349 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 GSN-AS1Q9NRJ2 163 aa8.2□□□□□ -1.1
VPS53-220ENST00000576149 ZGRF1Q86YA3 2104 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 PPP5D1E7EU14 171 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 GGCTO75223 188 aaKnown RBP8.19□□□□□ -1.1
VPS53-220ENST00000576149 RNASE2P10153 161 aaKnown RBP8.19□□□□□ -1.1
VPS53-220ENST00000576149 FAM71F2Q6NXP2 309 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 LINC00311Q8N616 119 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 OR1L8Q8NGR8 309 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 PCGF1Q9BSM1 259 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 OR51M1Q9H341 326 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 CTSZQ9UBR2 303 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 YTHDF2Q9Y5A9 579 aaKnown RBP8.19□□□□□ -1.1
VPS53-220ENST00000576149 YLPM1P49750 1951 aaKnown RBP8.19□□□□□ -1.1
VPS53-220ENST00000576149 IGKV1OR2-108A0A075B7D4 117 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 TRAV34A0A0B4J273 112 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 DVL1O14640 695 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 FOXH1O75593 365 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 RBPJQ06330 500 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 SLAQ13239 276 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 MOB3BQ86TA1 216 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 ZNF114Q8NC26 417 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 OR5T1Q8NG75 326 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 OR10W1Q8NGF6 305 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 OR2T10Q8NGZ9 312 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 TMEM186Q96B77 213 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 FLYWCH2Q96CP2 140 aaKnown RBP8.19□□□□□ -1.1
VPS53-220ENST00000576149 TMEM204Q9BSN7 226 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 SCNM1Q9BWG6 230 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 DYNLRB1Q9NP97 96 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 NDUFA4L2Q9NRX3 87 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 KAAG1Q9UBP8 84 aa8.19□□□□□ -1.1
VPS53-220ENST00000576149 ANKRD11Q6UB99 2663 aaPredicted RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 TRBV20OR9-2A0A075B6H5 130 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 SCO2A0A1W2PP80 73 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 A0A1W2PPQ1 181 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 INS-IGF2F8WCM5 200 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 MT-CO2P00403 227 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 TYMSP04818 313 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 LOXP28300 417 aaPredicted RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 REG1BP48304 166 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 DLX6P56179 175 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 FAM3BP58499 235 aaPredicted RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 RPL8P62917 257 aaKnown RBP8.18□□□□□ -1.1
VPS53-220ENST00000576149 GAMTQ14353 236 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 PYY3Q5JQD4 70 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 OR4C13Q8NGP0 309 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 OR10X1Q8NGY0 326 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 ST6GALNAC6Q969X2 333 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 NABP2Q9BQ15 211 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 VKORC1Q9BQB6 163 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 COMMD5Q9GZQ3 224 aa8.18□□□□□ -1.1
VPS53-220ENST00000576149 PRDM13Q9H4Q3 707 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms