RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 DCTN2Q13561 401 aaKnown RBP16.02■□□□□ 0.16
VPS53-210ENST00000571456 FAM223AQ8IWN6 122 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 ZNF491Q8N8L2 437 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 MARVELD1Q9BSK0 173 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 PLEKHA3Q9HB20 300 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 CACNG5Q9UF02 275 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 A0A0G2JRQ6 117 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 A0A1B0GW64 132 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 HMX3A6NHT5 357 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 ST8SIA3O43173 380 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 TPPP2P59282 170 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 RUNX1Q01196 453 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 NECAP1Q8NC96 275 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 ZNF431Q8TF32 576 aaPredicted RBP16.01■□□□□ 0.15
VPS53-210ENST00000571456 C4orf3Q8WVX3 66 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 HINT2Q9BX68 163 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 ENY2Q9NPA8 101 aa16.01■□□□□ 0.15
VPS53-210ENST00000571456 TRBV9A0A0B4J1U6 114 aa16■□□□□ 0.15
VPS53-210ENST00000571456 DBX1A6NMT0 343 aa16■□□□□ 0.15
VPS53-210ENST00000571456 ADARB2-AS1A8MUL3 147 aa16■□□□□ 0.15
VPS53-210ENST00000571456 FAM90A26D6RGX4 464 aa16■□□□□ 0.15
VPS53-210ENST00000571456 LY86O95711 162 aa16■□□□□ 0.15
VPS53-210ENST00000571456 OR13C7P0DN81 318 aa16■□□□□ 0.15
VPS53-210ENST00000571456 DEFA4P12838 97 aa16■□□□□ 0.15
VPS53-210ENST00000571456 ZNF114Q8NC26 417 aa16■□□□□ 0.15
VPS53-210ENST00000571456 KLK15Q9H2R5 256 aa16■□□□□ 0.15
VPS53-210ENST00000571456 C13orf42A0A1B0GVH6 325 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 SNRPGP15A8MWD9 76 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 NUDT19A8MXV4 375 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 INMT-MINDY4F8WBC2 141 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 APELAP0DMC3 54 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 MYOD1P15172 320 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 AREGP15514 252 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 WT1-ASQ06250 92 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 KIAA0141Q14154 515 aaPredicted RBP15.99■□□□□ 0.15
VPS53-210ENST00000571456 IZUMO4Q1ZYL8 232 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 NSUN5P1Q3KNT7 163 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 SAMD5Q5TGI4 173 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 Q6ZRM9 215 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 OR2C3Q8N628 320 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 KLHL30-AS1Q8NEE0 82 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 PRR13Q9NZ81 148 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 BIRC6Q9NR09 4857 aa15.99■□□□□ 0.15
VPS53-210ENST00000571456 SUB1P53999 127 aaKnown RBP eCLIP15.98■□□□□ 0.15
VPS53-210ENST00000571456 OR10W1Q8NGF6 305 aa15.98■□□□□ 0.15
VPS53-210ENST00000571456 OR1P1Q8NH06 330 aa15.98■□□□□ 0.15
VPS53-210ENST00000571456 OR1S1Q8NH92 325 aa15.98■□□□□ 0.15
VPS53-210ENST00000571456 HSPB7Q9UBY9 170 aa15.98■□□□□ 0.15
VPS53-210ENST00000571456 F11RQ9Y624 299 aaKnown RBP15.98■□□□□ 0.15
VPS53-210ENST00000571456 PITX3O75364 302 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 MED6O75586 246 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 HOXB5P09067 269 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 LGALS1P09382 135 aaKnown RBP15.97■□□□□ 0.15
VPS53-210ENST00000571456 SNCAP37840 140 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 ATP5IP56385 69 aaPredicted RBP15.97■□□□□ 0.15
VPS53-210ENST00000571456 GGNBP1Q5YKI7 109 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 NOXA1Q86UR1 476 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 C12orf45Q8N5I9 185 aaPredicted RBP15.97■□□□□ 0.15
VPS53-210ENST00000571456 MS4A10Q96PG2 267 aa15.97■□□□□ 0.15
VPS53-210ENST00000571456 IGLV11-55A0A075B6I3 123 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 CORTO00230 105 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 MYCNOSP40205 109 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 HOXA1P49639 335 aaPredicted RBP15.96■□□□□ 0.15
VPS53-210ENST00000571456 RHOGP84095 191 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 TNFRSF9Q07011 255 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 CXorf58Q96LI9 332 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 ATP6V0BQ99437 205 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 HIPK2Q9H2X6 1198 aa15.96■□□□□ 0.15
VPS53-210ENST00000571456 ATP5G2Q06055 141 aa15.95■□□□□ 0.14
VPS53-210ENST00000571456 RGS21Q2M5E4 152 aa15.95■□□□□ 0.14
VPS53-210ENST00000571456 LCNL1Q6ZST4 164 aa15.95■□□□□ 0.14
VPS53-210ENST00000571456 OR52B4Q8NGK2 314 aa15.95■□□□□ 0.14
VPS53-210ENST00000571456 FANCD2OSQ96PS1 177 aa15.95■□□□□ 0.14
VPS53-210ENST00000571456 DNAH3Q8TD57 4116 aa15.95■□□□□ 0.14
VPS53-210ENST00000571456 A0A1W2PRX2 142 aa15.94■□□□□ 0.14
VPS53-210ENST00000571456 CEBPZOSA8MTT3 80 aa15.94■□□□□ 0.14
VPS53-210ENST00000571456 I3L521 148 aa15.94■□□□□ 0.14
VPS53-210ENST00000571456 HTR2BP41595 481 aa15.94■□□□□ 0.14
VPS53-210ENST00000571456 CIB3Q96Q77 187 aaPredicted RBP15.94■□□□□ 0.14
VPS53-210ENST00000571456 SEC22CQ9BRL7 303 aa15.94■□□□□ 0.14
VPS53-210ENST00000571456 FBXL7Q9UJT9 491 aa15.94■□□□□ 0.14
VPS53-210ENST00000571456 EPPK1P58107 5090 aaKnown RBP15.93■□□□□ 0.14
VPS53-210ENST00000571456 PF4P02776 101 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 REG1AP05451 166 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 C15orf32Q32M92 178 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 ZNF343Q6P1L6 599 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 C8orf86Q6ZUL3 223 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 VN1R17PQ8TDU5 208 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 P2RX4Q99571 388 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 RANGRFQ9HD47 186 aaPredicted RBP15.93■□□□□ 0.14
VPS53-210ENST00000571456 HEYLQ9NQ87 328 aaPredicted RBP15.93■□□□□ 0.14
VPS53-210ENST00000571456 U3KQ87 197 aa15.93■□□□□ 0.14
VPS53-210ENST00000571456 TRBV7-1A0A0A6YYK4 115 aa15.92■□□□□ 0.14
VPS53-210ENST00000571456 ADAP1O75689 374 aa15.92■□□□□ 0.14
VPS53-210ENST00000571456 OR2J3O76001 311 aa15.92■□□□□ 0.14
VPS53-210ENST00000571456 HSPB1P04792 205 aaKnown RBP15.92■□□□□ 0.14
VPS53-210ENST00000571456 OR8U8P0C7N1 319 aa15.92■□□□□ 0.14
VPS53-210ENST00000571456 SLC25A24Q6NUK1 477 aa15.92■□□□□ 0.14
VPS53-210ENST00000571456 EEF1AKMT3Q96AZ1 226 aa15.92■□□□□ 0.14
VPS53-210ENST00000571456 GNB4Q9HAV0 340 aa15.92■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 406.6 ms