RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 C1orf174Q8IYL3 243 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 RAB37Q96AX2 223 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 HARBI1Q96MB7 349 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 GGTLC1Q9BX51 225 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 CLEC5AQ9NY25 188 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 FBXL7Q9UJT9 491 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 TMSB15BA0A087X1C1 80 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 PGPA6NDG6 321 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 TMEM210A6NLX4 147 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 KLF7O75840 302 aaPredicted RBP9.52□□□□□ -0.89
CLN3-238ENST00000569430 BTF3P20290 206 aaKnown RBP9.52□□□□□ -0.89
CLN3-238ENST00000569430 LDLRAD2Q5SZI1 272 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 GTF2H5Q6ZYL4 71 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 BPIFA4PQ86YQ2 179 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 PRNDQ9UKY0 176 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 LOC389332A0A1B0GUA5 103 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 A0A1W2PRD5 423 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 A0A1W2PRF3 423 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 A0A1W2PRM7 423 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 OR4C46A6NHA9 309 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 LMO1P25800 156 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 ASCL3Q9NQ33 180 aa9.52□□□□□ -0.89
CLN3-238ENST00000569430 YTHDF2Q9Y5A9 579 aaKnown RBP9.52□□□□□ -0.89
CLN3-238ENST00000569430 GAGE10A6NGK3 116 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 TNFSF15O95150 251 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 GPX1P07203 203 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 STAG3L2P0CL84 134 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 STAG3L3P0CL85 134 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 PRB4P10163 310 aaPredicted RBP9.51□□□□□ -0.89
CLN3-238ENST00000569430 FAM201AQ5SY85 155 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 DSPP15924 2871 aaKnown RBP9.51□□□□□ -0.89
CLN3-238ENST00000569430 TRAV3A0A0B4J244 114 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 LINC00473A8K010 186 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 ETV2O00321 342 aaPredicted RBP9.51□□□□□ -0.89
CLN3-238ENST00000569430 TMPRSS2O15393 492 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 ASPHD1Q5U4P2 390 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 FOXL2NBQ6ZUU3 175 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 MUC15Q8N387 334 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 TMEM70Q9BUB7 260 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 A0A1B0GWJ7 208 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 K7EQM0 130 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 RBP4P02753 201 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 KIR2DS2P43631 304 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 ZFP36L1Q07352 338 aaKnown RBP9.51□□□□□ -0.89
CLN3-238ENST00000569430 FOXF2Q12947 444 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 FBLN7Q53RD9 439 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 SLC35E4Q6ICL7 350 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 YPEL4Q96NS1 127 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 PROCRQ9UNN8 238 aa9.51□□□□□ -0.89
CLN3-238ENST00000569430 LYZP61626 148 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 DHRS13Q6UX07 377 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 Q6ZS49 121 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 C20orf144Q9BQM9 153 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 ARFGEF3Q5TH69 2177 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 C15orf62A8K5M9 175 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 ZNF891A8MT65 544 aaPredicted RBP9.5□□□□□ -0.89
CLN3-238ENST00000569430 MGST3O14880 152 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 KLF3P57682 345 aaPredicted RBP9.5□□□□□ -0.89
CLN3-238ENST00000569430 COA6Q5JTJ3 125 aaKnown RBP9.5□□□□□ -0.89
CLN3-238ENST00000569430 HCP5Q6MZN7 132 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 CRIP3Q6Q6R5 217 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 DYNLRB1Q9NP97 96 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 YLPM1P49750 1951 aaKnown RBP9.5□□□□□ -0.89
CLN3-238ENST00000569430 NKX6-3A6NJ46 265 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 A8MWL6 223 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 TYMSP04818 313 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 PPOXP50336 477 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 VWA1Q6PCB0 445 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 C12orf54Q6X4T0 127 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 MGST2Q99735 147 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 LINC00470Q9BZP3 86 aa9.5□□□□□ -0.89
CLN3-238ENST00000569430 NOTCH3Q9UM47 2321 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 TEX50A0A1B0GTY4 177 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 NPPCP23582 126 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 SRSF7Q16629 238 aaKnown RBP eCLIP9.49□□□□□ -0.89
CLN3-238ENST00000569430 TMEM177Q53S58 311 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 ZNF841Q6ZN19 808 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 NPIPB3Q92617 1050 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 PYGO2Q9BRQ0 406 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 MCRIP2Q9BUT9 160 aaKnown RBP9.49□□□□□ -0.89
CLN3-238ENST00000569430 CALYQ9NYX4 217 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 REG1AP05451 166 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 MYOD1P15172 320 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 COMPP49747 757 aaPredicted RBP9.49□□□□□ -0.89
CLN3-238ENST00000569430 LHFPL4Q7Z7J7 247 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 STPG4Q8N801 248 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 ADTRPQ96IZ2 230 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 CCL13Q99616 98 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 GNB1LQ9BYB4 327 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 HIGD1CA8MV81 97 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 Q6P435 159 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 ACP7Q6ZNF0 438 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 Q6ZPA2 131 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 TCF24Q7RTU0 167 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 PPP1R14DQ9NXH3 145 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 METRNQ9UJH8 293 aa9.49□□□□□ -0.89
CLN3-238ENST00000569430 LOC102723996A0A087X1L8 192 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 IGHV3-72A0A0B4J1Y9 119 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 CSN1S1P47710 185 aa9.48□□□□□ -0.89
CLN3-238ENST00000569430 PRNTQ86SH4 94 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms