RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 BMI1P35226 326 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 MFAP2P55001 183 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 HERV-K104P61576 105 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 TNFRSF9Q07011 255 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 DEFB135Q30KP9 77 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 ODF3L2Q3SX64 289 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 RNASE12Q5GAN4 147 aaKnown RBP11.08□□□□□ -0.64
CLN3-236ENST00000568558 SLC25A24Q6NUK1 477 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 LYG2Q86SG7 212 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 LYSMD2Q8IV50 215 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 OR1L8Q8NGR8 309 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 BORCS5Q969J3 196 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 BSCL2Q96G97 398 aaPredicted RBP11.08□□□□□ -0.64
CLN3-236ENST00000568558 EHFQ9NZC4 300 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 EXTL2Q9UBQ6 330 aa11.08□□□□□ -0.64
CLN3-236ENST00000568558 F11RQ9Y624 299 aaKnown RBP11.08□□□□□ -0.64
CLN3-236ENST00000568558 NUPR2A6NF83 97 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 MARCH11A6NNE9 402 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 NDUFA4O00483 81 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 LY6G6CO95867 125 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 F2RP25116 425 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 HLA-DMAP28067 261 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 ERVK-16P61578 105 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 LAMTOR1Q6IAA8 161 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 SPSB3Q6PJ21 355 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 LSM10Q969L4 123 aaKnown RBP11.07□□□□□ -0.64
CLN3-236ENST00000568558 ABHD1Q96SE0 405 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 ATP6V0BQ99437 205 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 BCL7BQ9BQE9 202 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 CHRDL1Q9BU40 450 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 NDUFA4L2Q9NRX3 87 aa11.07□□□□□ -0.64
CLN3-236ENST00000568558 IGHV3-21A0A0B4J1V1 117 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 KIR2DL5BA0A0G2JN68 375 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 KIR2DL5BA0A0G2JPC4 375 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 F8W735 103 aaPredicted RBP11.06□□□□□ -0.64
CLN3-236ENST00000568558 UBE2CO00762 179 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 RLN1P04808 185 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 HRH1P35367 487 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 DHRS11Q6UWP2 260 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 KIR2DL5AQ8N109 375 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 OR5H2Q8NGV7 314 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 KIR2DL5BQ8NHK3 375 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 SCARB1Q8WTV0 552 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 MOB3AQ96BX8 217 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 HINT2Q9BX68 163 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 SLIRPQ9GZT3 109 aaKnown RBP11.06□□□□□ -0.64
CLN3-236ENST00000568558 SCPEP1Q9HB40 452 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 C21orf62Q9NYP8 219 aa11.06□□□□□ -0.64
CLN3-236ENST00000568558 CCDC59Q9P031 241 aaKnown RBP11.06□□□□□ -0.64
CLN3-236ENST00000568558 IGHV3OR16-8A0A075B7F1 116 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 OR4C46A6NHA9 309 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 K7EIM0 57 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 K7EMT4 169 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 RGS5O15539 181 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 PGLYRP1O75594 196 aaPredicted RBP11.05□□□□□ -0.64
CLN3-236ENST00000568558 ATF4P18848 351 aaPredicted RBP11.05□□□□□ -0.64
CLN3-236ENST00000568558 ADMP35318 185 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 TAS2R46P59540 309 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 CADM3Q8N126 398 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 OR52I2Q8NH67 350 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 FCAMRQ8WWV6 532 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 RNF183Q96D59 192 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 ZNF2Q9BSG1 426 aaPredicted RBP11.05□□□□□ -0.64
CLN3-236ENST00000568558 C20orf24Q9BUV8 137 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 FXYD6Q9H0Q3 95 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 RBM38Q9H0Z9 239 aaKnown RBP11.05□□□□□ -0.64
CLN3-236ENST00000568558 NSG2Q9Y328 171 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 OR51B2Q9Y5P1 312 aa11.05□□□□□ -0.64
CLN3-236ENST00000568558 ZNF207O43670 478 aaKnown RBP11.04□□□□□ -0.64
CLN3-236ENST00000568558 NOL3O60936 208 aaKnown RBP11.04□□□□□ -0.64
CLN3-236ENST00000568558 KRASP01116 189 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 RCVRNP35243 200 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 LPAR6P43657 344 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 CEMP1Q6PRD7 247 aaPredicted RBP11.04□□□□□ -0.64
CLN3-236ENST00000568558 STPG3Q8N7X2 389 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 UBAC2Q8NBM4 344 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 DGCR14Q96DF8 476 aaKnown RBP11.04□□□□□ -0.64
CLN3-236ENST00000568558 GALNT14Q96FL9 552 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 ZNF414Q96IQ9 312 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 KLK11Q9UBX7 282 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 VPS13DQ5THJ4 4388 aa11.04□□□□□ -0.64
CLN3-236ENST00000568558 C15orf62A8K5M9 175 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 M0QYG6 137 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 SNAPC5O75971 98 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 CTSDP07339 412 aaPredicted RBP11.03□□□□□ -0.64
CLN3-236ENST00000568558 RPL35AP18077 110 aaKnown RBP11.03□□□□□ -0.64
CLN3-236ENST00000568558 G6PCP35575 357 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 Q56UQ5 140 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 MAP6D1Q9H9H5 199 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 PRNDQ9UKY0 176 aa11.03□□□□□ -0.64
CLN3-236ENST00000568558 DBX1A6NMT0 343 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 C15orf61A6NNL5 157 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 GPR31O00270 319 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 CTSGP08311 255 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 CMTM1Q8IZ96 169 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 OR5B3Q8NH48 314 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 TMEM56Q96MV1 263 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 C6orf62Q9GZU0 229 aaPredicted RBP11.02□□□□□ -0.65
CLN3-236ENST00000568558 SMPXQ9UHP9 88 aa11.02□□□□□ -0.65
CLN3-236ENST00000568558 KLK5Q9Y337 293 aaPredicted RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms