RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 BLOC1S6Q9UL45 172 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 APLNQ9ULZ1 77 aa12.87□□□□□ -0.35
CLK3-221ENST00000568139 MRPS14O60783 128 aaKnown RBP12.86□□□□□ -0.35
CLK3-221ENST00000568139 TFPI2P48307 235 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 SCAND1P57086 179 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 TMEM17Q86X19 198 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 OR5AP2Q8NGF4 316 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 SLC25A38Q96DW6 304 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 HINT2Q9BX68 163 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 NSG2Q9Y328 171 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 OR51B2Q9Y5P1 312 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 KIAA1109Q2LD37 5005 aa12.86□□□□□ -0.35
CLK3-221ENST00000568139 DNAH6Q9C0G6 4158 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 A0A0A6YYH2 397 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 A6NJ64 397 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 NUPL2O15504 423 aaKnown RBP12.85□□□□□ -0.35
CLK3-221ENST00000568139 F2RP25116 425 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 UBE2UQ5VVX9 321 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 OR5H6Q8NGV6 325 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 OR1P1Q8NH06 330 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 BORCS5Q969J3 196 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 DGCR14Q96DF8 476 aaKnown RBP12.85□□□□□ -0.35
CLK3-221ENST00000568139 CMTM3Q96MX0 182 aa12.85□□□□□ -0.35
CLK3-221ENST00000568139 IGKV3-7A0A075B6H7 116 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 IGHV3-49A0A0A0MS15 119 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 TRAV14DV4A0A0A6YYC5 116 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 DEFB4AO15263 64 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 PGLYRP1O75594 196 aaPredicted RBP12.84□□□□□ -0.35
CLK3-221ENST00000568139 SNAPC5O75971 98 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 CA1P00915 261 aaPredicted RBP12.84□□□□□ -0.35
CLK3-221ENST00000568139 FCER2P06734 321 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 TMEM187Q14656 261 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 GBGT1Q8N5D6 347 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 FCAMRQ8WWV6 532 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 CNBD2Q96M20 576 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 TMEM56Q96MV1 263 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 TXN2Q99757 166 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 AUNIPQ9H7T9 357 aa12.84□□□□□ -0.35
CLK3-221ENST00000568139 IGLL5B9A064 214 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 C11orf94C9JXX5 98 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 I3L2K1 104 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 YIF1AO95070 293 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 KRASP01116 189 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 SDC2P34741 201 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 G6PCP35575 357 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 LPAR6P43657 344 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 CBX5P45973 191 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 MFAP4P55083 255 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 PAFAH1B2P68402 229 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 DHRS11Q6UWP2 260 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 NXF2Q9GZY0 626 aaKnown RBP12.83□□□□□ -0.36
CLK3-221ENST00000568139 HRH4Q9H3N8 390 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 FKBP11Q9NYL4 201 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 PRNDQ9UKY0 176 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 SSR3Q9UNL2 185 aa12.83□□□□□ -0.36
CLK3-221ENST00000568139 C15orf61A6NNL5 157 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 ANKRD65E5RJM6 399 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 RLN1P04808 185 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 CD5P06127 495 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 HERV-K104P61576 105 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 TCF24Q7RTU0 167 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 SLC25A46Q96AG3 418 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 TMEM14BQ9NUH8 114 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 AGRNO00468 2067 aa12.82□□□□□ -0.36
CLK3-221ENST00000568139 IGHV3OR16-13A0A075B7E8 117 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 IGHV3-74A0A0B4J1X5 117 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 DBX1A6NMT0 343 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 DFFBO76075 338 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 CLEC2LP0C7M8 214 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 GABARAPL2P60520 117 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 Q8NAQ8 132 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 MOB3AQ96BX8 217 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 VSIRQ9H7M9 311 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 DIABLOQ9NR28 239 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 EHFQ9NZC4 300 aa12.81□□□□□ -0.36
CLK3-221ENST00000568139 PSMB9P28065 219 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 HSPA13P48723 471 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 DEFB131AP59861 70 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 MXD1Q05195 221 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 IDNKQ5T6J7 187 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 LINC00336Q6ZUF6 198 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 SPARTQ8N0X7 666 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 LILRB2Q8N423 598 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 ST8SIA2Q92186 375 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 MISP3Q96FF7 219 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 TSC22D3Q99576 134 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 MS4A6AQ9H2W1 248 aa12.8□□□□□ -0.36
CLK3-221ENST00000568139 TRAV2A0A0B4J234 112 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 MEIS3P1A6NDR6 274 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 MT-CO2P00403 227 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 RFX2P48378 723 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 LEMD1Q68G75 181 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 IZUMO2Q6UXV1 221 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 ZNF114Q8NC26 417 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 TSPAN14Q8NG11 270 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 GINS3Q9BRX5 216 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 ZNF2Q9BSG1 426 aaPredicted RBP12.79□□□□□ -0.36
CLK3-221ENST00000568139 VCX3BQ9H321 246 aa12.79□□□□□ -0.36
CLK3-221ENST00000568139 DNASE2O00115 360 aaPredicted RBP12.78□□□□□ -0.36
CLK3-221ENST00000568139 ST8SIA3O43173 380 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms