RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 SHPKQ9UHJ6 478 aa15.08■□□□□ 0
CLN3-225ENST00000566824 IGHV3-23P01764 117 aa15.07■□□□□ 0
CLN3-225ENST00000566824 HLA-AP01891 365 aaKnown RBP15.07■□□□□ 0
CLN3-225ENST00000566824 MECP2P51608 486 aaKnown RBP15.07■□□□□ 0
CLN3-225ENST00000566824 SLURP1P55000 103 aa15.07■□□□□ 0
CLN3-225ENST00000566824 RAB25P57735 213 aa15.07■□□□□ 0
CLN3-225ENST00000566824 UBE2MP61081 183 aaKnown RBP15.07■□□□□ 0
CLN3-225ENST00000566824 THOC7Q6I9Y2 204 aaKnown RBP15.07■□□□□ 0
CLN3-225ENST00000566824 ZNF343Q6P1L6 599 aa15.07■□□□□ 0
CLN3-225ENST00000566824 LYG2Q86SG7 212 aa15.07■□□□□ 0
CLN3-225ENST00000566824 NECAP1Q8NC96 275 aa15.07■□□□□ 0
CLN3-225ENST00000566824 NUDT15Q9NV35 164 aa15.07■□□□□ 0
CLN3-225ENST00000566824 A0A0G2JLM5 398 aa15.06■□□□□ 0
CLN3-225ENST00000566824 FAM240BA0A1B0GVZ2 78 aa15.06■□□□□ 0
CLN3-225ENST00000566824 IFNA17P01571 189 aa15.06■□□□□ 0
CLN3-225ENST00000566824 DEFA4P12838 97 aa15.06■□□□□ 0
CLN3-225ENST00000566824 SRPXP78539 464 aa15.06■□□□□ 0
CLN3-225ENST00000566824 ATP5G2Q06055 141 aa15.06■□□□□ 0
CLN3-225ENST00000566824 ZNF616Q08AN1 781 aa15.06■□□□□ 0
CLN3-225ENST00000566824 EXOSC2Q13868 293 aaKnown RBP15.06■□□□□ 0
CLN3-225ENST00000566824 C15orf32Q32M92 178 aa15.06■□□□□ 0
CLN3-225ENST00000566824 OR2C3Q8N628 320 aa15.06■□□□□ 0
CLN3-225ENST00000566824 USMG5Q96IX5 58 aa15.06■□□□□ 0
CLN3-225ENST00000566824 CTNNBIP1Q9NSA3 81 aaPredicted RBP15.06■□□□□ 0
CLN3-225ENST00000566824 F11RQ9Y624 299 aaKnown RBP15.06■□□□□ 0
CLN3-225ENST00000566824 MFSD2BA6NFX1 497 aa15.05■□□□□ -0
CLN3-225ENST00000566824 FAM223BA6NKX1 122 aa15.05■□□□□ -0
CLN3-225ENST00000566824 G3V4G9 280 aa15.05■□□□□ -0
CLN3-225ENST00000566824 ADAP1O75689 374 aa15.05■□□□□ -0
CLN3-225ENST00000566824 HOXB5P09067 269 aa15.05■□□□□ -0
CLN3-225ENST00000566824 IGLL1P15814 213 aa15.05■□□□□ -0
CLN3-225ENST00000566824 CD33P20138 364 aa15.05■□□□□ -0
CLN3-225ENST00000566824 C4orf46Q504U0 113 aa15.05■□□□□ -0
CLN3-225ENST00000566824 MZT2BQ6NZ67 158 aa15.05■□□□□ -0
CLN3-225ENST00000566824 C1QL4Q86Z23 238 aa15.05■□□□□ -0
CLN3-225ENST00000566824 FAM223AQ8IWN6 122 aa15.05■□□□□ -0
CLN3-225ENST00000566824 SEC22CQ9BRL7 303 aa15.05■□□□□ -0
CLN3-225ENST00000566824 PLEKHA3Q9HB20 300 aa15.05■□□□□ -0
CLN3-225ENST00000566824 IGHV3-21A0A0B4J1V1 117 aa15.04■□□□□ -0
CLN3-225ENST00000566824 HSPB1P04792 205 aaKnown RBP15.04■□□□□ -0
CLN3-225ENST00000566824 H2AFB2P0C5Z0 115 aa15.04■□□□□ -0
CLN3-225ENST00000566824 SULT1A3P0DMM9 295 aa15.04■□□□□ -0
CLN3-225ENST00000566824 SULT1A4P0DMN0 295 aa15.04■□□□□ -0
CLN3-225ENST00000566824 OXLD1Q5BKU9 147 aa15.04■□□□□ -0
CLN3-225ENST00000566824 SLC25A24Q6NUK1 477 aa15.04■□□□□ -0
CLN3-225ENST00000566824 HSD17B13Q7Z5P4 300 aaPredicted RBP15.04■□□□□ -0
CLN3-225ENST00000566824 NRARPQ7Z6K4 114 aa15.04■□□□□ -0
CLN3-225ENST00000566824 CCDC140Q96MF4 163 aa15.04■□□□□ -0
CLN3-225ENST00000566824 MEGF8Q7Z7M0 2845 aa15.04■□□□□ -0
CLN3-225ENST00000566824 MPTX1A8MV57 137 aa15.03■□□□□ -0
CLN3-225ENST00000566824 LINC01619G3V211 115 aa15.03■□□□□ -0
CLN3-225ENST00000566824 DHFRP00374 187 aa15.03■□□□□ -0
CLN3-225ENST00000566824 SMCO1Q147U7 214 aa15.03■□□□□ -0
CLN3-225ENST00000566824 GGNBP1Q5YKI7 109 aa15.03■□□□□ -0
CLN3-225ENST00000566824 DCUN1D4Q92564 292 aa15.03■□□□□ -0
CLN3-225ENST00000566824 DPF1Q92782 380 aa15.03■□□□□ -0
CLN3-225ENST00000566824 DLX4Q92988 240 aaPredicted RBP15.03■□□□□ -0
CLN3-225ENST00000566824 DUXBA0A1W2PPF3 345 aa15.02■□□□□ -0
CLN3-225ENST00000566824 DUS4LO95620 317 aaKnown RBP15.02■□□□□ -0
CLN3-225ENST00000566824 SPNP16150 400 aa15.02■□□□□ -0
CLN3-225ENST00000566824 HIST1H1BP16401 226 aaKnown RBP15.02■□□□□ -0
CLN3-225ENST00000566824 HOXA1P49639 335 aaPredicted RBP15.02■□□□□ -0
CLN3-225ENST00000566824 SPCS3P61009 180 aa15.02■□□□□ -0
CLN3-225ENST00000566824 OR52E5Q8NH55 327 aa15.02■□□□□ -0
CLN3-225ENST00000566824 PDCD10Q9BUL8 212 aa15.02■□□□□ -0
CLN3-225ENST00000566824 PEF1Q9UBV8 284 aaKnown RBP15.02■□□□□ -0
CLN3-225ENST00000566824 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP15.01□□□□□ -0.01
CLN3-225ENST00000566824 A0A1B0GU03 582 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 PPP5D1E7EU14 171 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 INS-IGF2F8WCM5 200 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 K7EIM0 57 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 BMPR1BO00238 502 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 PITX3O75364 302 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 RNASE2P10153 161 aaKnown RBP15.01□□□□□ -0.01
CLN3-225ENST00000566824 HOXD3P31249 432 aaPredicted RBP15.01□□□□□ -0.01
CLN3-225ENST00000566824 PDLIM3Q53GG5 364 aaPredicted RBP15.01□□□□□ -0.01
CLN3-225ENST00000566824 SAMD5Q5TGI4 173 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 OR1P1Q8NH06 330 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 ENKURQ8TC29 256 aa15.01□□□□□ -0.01
CLN3-225ENST00000566824 OR8U8P0C7N1 319 aa15□□□□□ -0.01
CLN3-225ENST00000566824 CLEC19AQ6UXS0 136 aa15□□□□□ -0.01
CLN3-225ENST00000566824 ZNF114Q8NC26 417 aa15□□□□□ -0.01
CLN3-225ENST00000566824 DUSP18Q8NEJ0 188 aa15□□□□□ -0.01
CLN3-225ENST00000566824 OR1S1Q8NH92 325 aa15□□□□□ -0.01
CLN3-225ENST00000566824 MITD1Q8WV92 249 aa15□□□□□ -0.01
CLN3-225ENST00000566824 RBKSQ9H477 322 aa15□□□□□ -0.01
CLN3-225ENST00000566824 RANGRFQ9HD47 186 aaPredicted RBP15□□□□□ -0.01
CLN3-225ENST00000566824 HSPB7Q9UBY9 170 aa15□□□□□ -0.01
CLN3-225ENST00000566824 DNAH3Q8TD57 4116 aa15□□□□□ -0.01
CLN3-225ENST00000566824 IGHV3-48P01763 117 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 ERHP84090 104 aaKnown RBP14.99□□□□□ -0.01
CLN3-225ENST00000566824 TNFRSF9Q07011 255 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 BSXQ3C1V8 233 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 COQ8AQ8NI60 647 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 ZNF502Q8TBZ5 544 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 TMEM170AQ8WVE7 144 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 EEF1AKMT3Q96AZ1 226 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 MISP3Q96FF7 219 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 ZC4H2Q9NQZ6 224 aa14.99□□□□□ -0.01
CLN3-225ENST00000566824 TMED3Q9Y3Q3 217 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms