RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 CD33P20138 364 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 NKX2-5P52952 324 aaPredicted RBP7.25□□□□□ -1.25
LDLR-211ENST00000560173 KPRPQ5T749 579 aaPredicted RBP7.25□□□□□ -1.25
LDLR-211ENST00000560173 ZNF767PQ75MW2 155 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 C1QL4Q86Z23 238 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 LGI3Q8N145 548 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 LRTM2Q8N967 370 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 THAP6Q8TBB0 222 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 TMEM230Q96A57 120 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 ZNF355PQ9NSJ1 428 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 COA4Q9NYJ1 87 aa7.25□□□□□ -1.25
LDLR-211ENST00000560173 A0A0D9SG52 128 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 NPIPB5A8MRT5 1133 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 RBMXL2O75526 392 aaKnown RBP7.24□□□□□ -1.25
LDLR-211ENST00000560173 IGHV3-11P01762 117 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 SERPINE2P07093 398 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 SLC25A4P12235 298 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 AREGP15514 252 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 IGLL1P15814 213 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 G6PCP35575 357 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 NUP62P37198 522 aaPredicted RBP7.24□□□□□ -1.25
LDLR-211ENST00000560173 H2BFSP57053 126 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 OR2B8PP59922 312 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 DEFA5Q01523 94 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 BEAN1Q3B7T3 259 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 OXLD1Q5BKU9 147 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 C9orf62Q8N4C0 152 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 TTC9CQ8N5M4 171 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 OR11H1Q8NG94 326 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 OR1N2Q8NGR9 330 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 RCC1LQ96I51 464 aaKnown RBP7.24□□□□□ -1.25
LDLR-211ENST00000560173 SEC22AQ96IW7 307 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 C2orf50Q96LR7 162 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 TP53RKQ96S44 253 aa7.24□□□□□ -1.25
LDLR-211ENST00000560173 TRBV9A0A0B4J1U6 114 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 A0A0G2JLM5 398 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 C3orf85A0A1B0GTC6 90 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 C13orf42A0A1B0GVH6 325 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 IGLC7A0M8Q6 106 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 FAM25EA8MYX2 175 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 L7N2F9 121 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 IGKV1-5P01602 117 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 PRH1P02810 166 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 RLN2P04090 185 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 CRYGCP07315 174 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 OR8U8P0C7N1 319 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 UCP1P25874 307 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 PSMB6P28072 239 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 SUPT4H1P63272 117 aaKnown RBP7.23□□□□□ -1.25
LDLR-211ENST00000560173 RHOGP84095 191 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 ZNF616Q08AN1 781 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 OR2F1Q13607 317 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 ZNF345Q14585 488 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 SMCO1Q147U7 214 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 C19orf35Q6ZS72 473 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 INO80EQ8NBZ0 244 aaPredicted RBP7.23□□□□□ -1.25
LDLR-211ENST00000560173 IL22RA2Q969J5 263 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 SRSF8Q9BRL6 282 aaKnown RBP7.23□□□□□ -1.25
LDLR-211ENST00000560173 QTRT1Q9BXR0 403 aaKnown RBP7.23□□□□□ -1.25
LDLR-211ENST00000560173 COMMD5Q9GZQ3 224 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 PRNDQ9UKY0 176 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 ZNF257Q9Y2Q1 563 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 NSG2Q9Y328 171 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 TMED3Q9Y3Q3 217 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 RYR3Q15413 4870 aa7.23□□□□□ -1.25
LDLR-211ENST00000560173 IGHV4OR15-8A0A075B7B6 117 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 A0A087WW49 117 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 TEX50A0A1B0GTY4 177 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 FAM223BA6NKX1 122 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 C15orf61A6NNL5 157 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 LINC01619G3V211 115 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 SMLR1H3BR10 107 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 ATG12O94817 140 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 SIX6O95475 246 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 IFNA7P01567 189 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 P0C879 139 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 CTRB1P17538 263 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 KLK9Q2XQG4 91 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 SP6Q3SY56 376 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 CTRB2Q6GPI1 263 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 THOC7Q6I9Y2 204 aaKnown RBP7.22□□□□□ -1.25
LDLR-211ENST00000560173 C11orf87Q6NUJ2 197 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 H2BFWTQ7Z2G1 175 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 ZNF546Q86UE3 836 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 FAM223AQ8IWN6 122 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 NECAP1Q8NC96 275 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 OR1L8Q8NGR8 309 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 PPP1R1CQ8WVI7 109 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 DPF1Q92782 380 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 USMG5Q96IX5 58 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 MCRIP2Q9BUT9 160 aaKnown RBP7.22□□□□□ -1.25
LDLR-211ENST00000560173 TMEM222Q9H0R3 208 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 TMEM14BQ9NUH8 114 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 KLK9Q9UKQ9 250 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 OR51B2Q9Y5P1 312 aa7.22□□□□□ -1.25
LDLR-211ENST00000560173 FXYD6-FXYD2A0A087WZ82 144 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 CDS2O95674 445 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 HSPB1P04792 205 aaKnown RBP7.21□□□□□ -1.26
LDLR-211ENST00000560173 REG1AP05451 166 aa7.21□□□□□ -1.26
LDLR-211ENST00000560173 OR5AC1P0C628 307 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms