RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 NSG2Q9Y328 171 aa12.13□□□□□ -0.47
CCDC88C-209ENST00000554872 IZUMO1RA6ND01 250 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 TGOLN2O43493 480 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 IGHV3-23P01764 117 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 CTSDP07339 412 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 CBLN1P23435 193 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 UCP1P25874 307 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 HSPE1P61604 102 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 OR2C3Q8N628 320 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 OR13C8Q8NGS7 320 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 OR4A16Q8NH70 328 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 DYNLRB2Q8TF09 96 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 DIRAS2Q96HU8 199 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 TP53RKQ96S44 253 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 ASCL2Q99929 193 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 SOSTQ9BQB4 213 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 PALMDQ9NP74 551 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 S4R3C0 116 aa12.12□□□□□ -0.47
CCDC88C-209ENST00000554872 C3orf85A0A1B0GTC6 90 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 F8W735 103 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 K7EIM0 57 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 IGKV1-5P01602 117 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 GPR183P32249 361 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 PPP5CP53041 499 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 AARDQ4LEZ3 155 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 HINT2Q9BX68 163 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 GAR1Q9NY12 217 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 SLC2A8Q9NY64 477 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 C21orf62Q9NYP8 219 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 COPZ2Q9P299 210 aa12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 RSL24D1Q9UHA3 163 aaKnown RBP12.11□□□□□ -0.47
CCDC88C-209ENST00000554872 ZNF785A8K8V0 405 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 AKAIN1P0CW23 69 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 PI3P19957 117 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 IL18Q14116 193 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 SLC25A24Q6NUK1 477 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 PLET1Q6UQ28 207 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 SCARB1Q8WTV0 552 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 TMEM190Q8WZ59 177 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 RCHY1Q96PM5 261 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 ZMAT4Q9H898 229 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 UFC1Q9Y3C8 167 aa12.1□□□□□ -0.47
CCDC88C-209ENST00000554872 TRAV25A0A0B4J276 109 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 ANKRD20A5PA0PJZ0 165 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 DISC1C4P0D8 188 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 NDUFA4O00483 81 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 SCGB2B2Q4G0G5 96 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 PVRIGQ6DKI7 326 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 UNQ9165/PRO28630Q6UXU0 137 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 LINC00322Q6ZN03 302 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 FAM219AQ8IW50 185 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 OR4C16Q8NGL9 310 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 MARCH1Q8TCQ1 289 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 TXN2Q99757 166 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 PRRT1Q99946 306 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 C6orf62Q9GZU0 229 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 TMEM222Q9H0R3 208 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 MRPL27Q9P0M9 148 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 CEPT1Q9Y6K0 416 aa12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 HUWE1Q7Z6Z7 4374 aaKnown RBP12.09□□□□□ -0.47
CCDC88C-209ENST00000554872 A0A0B4J293 547 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 ZNF320A2RRD8 509 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 I3L2K1 104 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 CDS2O95674 445 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 AKR1C2P52895 323 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 ZNF57Q68EA5 555 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 NEURL2Q9BR09 285 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 RTBDNQ9BSG5 229 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 PLEKHA3Q9HB20 300 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 MLXQ9UH92 298 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 GPR132Q9UNW8 380 aa12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 C14orf166Q9Y224 244 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-209ENST00000554872 OR2T8A6NH00 312 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 K7EMT4 169 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 EDN2P20800 178 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 TNFSF8P32971 234 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 ADMP35318 185 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 CD81P60033 236 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 ERHP84090 104 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 TMEM61Q8N0U2 210 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 UXS1Q8NBZ7 420 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 MCFD2Q8NI22 146 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 CACNG8Q8WXS5 425 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 C5orf66Q9H5L9 145 aa12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 DAZ1Q9NQZ3 744 aaKnown RBP12.07□□□□□ -0.48
CCDC88C-209ENST00000554872 CRYM-AS1A6NIL9 109 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 ZNF701M0R085 212 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 DHODHQ02127 395 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 TRIM16LQ309B1 348 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 TM4SF20Q53R12 229 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 FAAP20Q6NZ36 180 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 GLYATL2Q8WU03 294 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 DEDD2Q8WXF8 326 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 RRNAD1Q96FB5 475 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 WDR89Q96FK6 387 aaPredicted RBP12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 SPATA25Q9BR10 227 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 CHRDL1Q9BU40 450 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 RBM38Q9H0Z9 239 aaKnown RBP12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 NAA60Q9H7X0 242 aa12.06□□□□□ -0.48
CCDC88C-209ENST00000554872 TEX13DA0A0J9YY54 714 aaPredicted RBP12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms