RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CCDC71LQ8N9Z2 235 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 OR5B3Q8NH48 314 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 GLYATL2Q8WU03 294 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 TSC22D3Q99576 134 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 ASCL2Q99929 193 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 NAA60Q9H7X0 242 aa8.8□□□□□ -1
CCDC88C-208ENST00000554165 C14orf166Q9Y224 244 aaKnown RBP8.8□□□□□ -1
CCDC88C-208ENST00000554165 F11RQ9Y624 299 aaKnown RBP8.8□□□□□ -1
CCDC88C-208ENST00000554165 CRYM-AS1A6NIL9 109 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 K7EIM0 57 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 ST8SIA3O43173 380 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 GGCTO75223 188 aaKnown RBP8.79□□□□□ -1
CCDC88C-208ENST00000554165 IGHV3-48P01763 117 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 GP9P14770 177 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 S100A5P33763 92 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 AKR1C2P52895 323 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 HSPE1P61604 102 aaKnown RBP8.79□□□□□ -1
CCDC88C-208ENST00000554165 PRCDQ00LT1 54 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 UNQ9165/PRO28630Q6UXU0 137 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 SELENOHQ8IZQ5 122 aaKnown RBP8.79□□□□□ -1
CCDC88C-208ENST00000554165 OR2C3Q8N628 320 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 OR6Q1Q8NGQ2 317 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 CACNG8Q8WXS5 425 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 PRRT1Q99946 306 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 B9D2Q9BPU9 175 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 TMEM222Q9H0R3 208 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 SLC2A8Q9NY64 477 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 FKBP11Q9NYL4 201 aa8.79□□□□□ -1
CCDC88C-208ENST00000554165 ZMAT5Q9UDW3 170 aaKnown RBP8.79□□□□□ -1
CCDC88C-208ENST00000554165 TRBV7-1A0A0A6YYK4 115 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 ZNF320A2RRD8 509 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 OR2T8A6NH00 312 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 C2orf70A6NJV1 201 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 F8W735 103 aaPredicted RBP8.78□□□□□ -1
CCDC88C-208ENST00000554165 CDS2O95674 445 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 ETV6P41212 452 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 CD69Q07108 199 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 SURF2Q15527 256 aaPredicted RBP8.78□□□□□ -1
CCDC88C-208ENST00000554165 TATDN3Q17R31 274 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 THOC7Q6I9Y2 204 aaKnown RBP8.78□□□□□ -1
CCDC88C-208ENST00000554165 Q8N1Y9 231 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 SCARB1Q8WTV0 552 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 MISP3Q96FF7 219 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 CXorf58Q96LI9 332 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 TMEM56Q96MV1 263 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 CHRDL1Q9BU40 450 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 SRRQ9GZT4 340 aa8.78□□□□□ -1
CCDC88C-208ENST00000554165 IGHV3OR16-8A0A075B7F1 116 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 FOLR2P14207 255 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 AKR1C4P17516 323 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 SUPT4H1P63272 117 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM187Q14656 261 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 BAK1Q16611 211 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 TM4SF20Q53R12 229 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM268Q5VZI3 342 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 HSD17B13Q7Z5P4 300 aaPredicted RBP8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 GPHB5Q86YW7 130 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 TOMM5Q8N4H5 51 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 VN1R17PQ8TDU5 208 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 GPR146Q96CH1 333 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 ZNF414Q96IQ9 312 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 SDHCQ99643 169 aaPredicted RBP8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 SCP2D1Q9UJQ7 156 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 STAB2Q8WWQ8 2551 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 TENM3Q9P273 2699 aa8.77□□□□□ -1.01
CCDC88C-208ENST00000554165 LINC00854A0A1B0GVQ3 168 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 TMEM213A2RRL7 107 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 I3L2K1 104 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 NXPH3O95157 252 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 IFNA17P01571 189 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 ADMP35318 185 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 DEFB114Q30KQ6 69 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 CD300EQ496F6 205 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 FAM209BQ5JX69 171 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 PLET1Q6UQ28 207 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 UBAC2Q8NBM4 344 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 OR1P1Q8NH06 330 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 RNASE11Q8TAA1 199 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 RBPMSQ93062 196 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 RRNAD1Q96FB5 475 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 PLEKHA3Q9HB20 300 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 C21orf62Q9NYP8 219 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 SIGLEC8Q9NYZ4 499 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 THYN1Q9P016 225 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 PEMTQ9UBM1 199 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 CACNG5Q9UF02 275 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 SMAD5-AS1Q9Y6J3 95 aa8.76□□□□□ -1.01
CCDC88C-208ENST00000554165 ZNF785A8K8V0 405 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 LGALS9O00182 355 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 TGOLN2O43493 480 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 ZNF207O43670 478 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 MT-CO2P00403 227 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 CBLN1P23435 193 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 DHODHQ02127 395 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 MLANAQ16655 118 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 FAM106AQ4KMX7 169 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 SPANXN2Q5MJ10 180 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 ZNF57Q68EA5 555 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 LYZL2Q7Z4W2 148 aa8.75□□□□□ -1.01
CCDC88C-208ENST00000554165 TMED4Q7Z7H5 227 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms