RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 J3QR06 171 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 CRYBB3P26998 211 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 GLRXP35754 106 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 CFHR2P36980 270 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 SLC35B1P78383 322 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 TDRG1Q3Y452 100 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 DOLPP1Q86YN1 238 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 NEUROG1Q92886 237 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 GAFA1Q96PS6 74 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 NABP2Q9BQ15 211 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 NDUFAF3Q9BU61 184 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 CBLN4Q9NTU7 201 aa6.13□□□□□ -1.43
LIMA1-213ENST00000552720 POLR3KQ9Y2Y1 108 aaPredicted RBP6.13□□□□□ -1.43
LIMA1-213ENST00000552720 MBD3L4A6NDZ8 208 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MBD3L3A6NE82 208 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MBD3L5A6NJ08 208 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 IGHV1-46P01743 117 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 CT45A6P0DMU7 189 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 CT45A5P0DMU8 189 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 CT45A7P0DMV0 189 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 IER3P46695 156 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 RPL29P47914 159 aaKnown RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 RAB7AP51149 207 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 RAB4BP61018 213 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 YPEL3P61236 119 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MZT1Q08AG7 82 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 FAM27E3Q08E93 113 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 FXYD3Q14802 87 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MORN5Q5VZ52 161 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 OR8I2Q8N0Y5 310 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 OR9G1Q8NH87 305 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MBD3L2Q8NHZ7 208 aaPredicted RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MS4A10Q96PG2 267 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 ATG101Q9BSB4 218 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 MRPL18Q9H0U6 180 aaKnown RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 RNASE7Q9H1E1 156 aaKnown RBP6.12□□□□□ -1.43
LIMA1-213ENST00000552720 ENY2Q9NPA8 101 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 PARD6AQ9NPB6 346 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 TP53TG5Q9Y2B4 290 aa6.12□□□□□ -1.43
LIMA1-213ENST00000552720 TRGV10A0A0A0MS01 117 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 E7EUB6 86 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 K7EM74 188 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 SERF1AO75920 110 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 IGHV3-48P01763 117 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 OR10J1P30954 320 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 CCKARP32238 428 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 KIR2DS2P43631 304 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 REG1BP48304 166 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TAS2R60P59551 318 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 ERVFC1-1P60608 527 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TNFAIP6P98066 277 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 IQCJQ1A5X6 159 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 CENPWQ5EE01 88 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 STUMQ69YW2 141 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 PQLC2Q6ZP29 291 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TGIF2LXQ8IUE1 241 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 OR1L6Q8NGR2 347 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 NOL4LQ96MY1 436 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 IL36BQ9NZH7 164 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 RNF7Q9UBF6 113 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 RNF114Q9Y508 228 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TPRP12270 2363 aaKnown RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 IGLV3-9A0A075B6K5 115 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TRAV5A0A0B4J249 113 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TEX50A0A1B0GTY4 177 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF705FA8MVS1 300 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 OR7C2O60412 319 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 FCN3O75636 299 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 PF4P02776 101 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF705DP0CH99 300 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 ZNF705BP0CI00 300 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 CDKN1AP38936 164 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TCL1AP56279 114 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 LGALS4P56470 323 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 CCL8P80075 99 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 SSBP2P81877 361 aaPredicted RBP6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TIMM23BQ5SRD1 257 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 Q6ZWC4 215 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 MMD2Q8IY49 270 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 NHLRC2Q8NBF2 726 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 ST6GALNAC3Q8NDV1 305 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 CMTM2Q8TAZ6 248 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 FAM222BQ8WU58 562 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 C11orf52Q96A22 123 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TBX15Q96SF7 602 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 TXNDC17Q9BRA2 123 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 C2orf88Q9BSF0 95 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 PLEKHA3Q9HB20 300 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 SLC35D1Q9NTN3 355 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 NAGKQ9UJ70 344 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 SLC45A2Q9UMX9 530 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 V9GYV3 84 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 APC2O95996 2303 aa6.11□□□□□ -1.43
LIMA1-213ENST00000552720 SNURFLB1AK76 121 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 GGTLC3B5MD39 225 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 UPK2O00526 184 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 SAA1P0DJI8 122 aaPredicted RBP6.1□□□□□ -1.43
LIMA1-213ENST00000552720 CCL3L1P16619 93 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 PRCDQ00LT1 54 aa6.1□□□□□ -1.43
LIMA1-213ENST00000552720 DIAPH2-AS1Q14236 149 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms