RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 SSNA1O43805 119 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 PITX3O75364 302 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 SNCAP37840 140 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 RPL23AP62750 156 aaKnown RBP11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 DEFA5Q01523 94 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 TNFRSF9Q07011 255 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 IAH1Q2TAA2 248 aaPredicted RBP11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 OR2C3Q8N628 320 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 HIPK2Q9H2X6 1198 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 GSKIPQ9P0R6 139 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 HSPB7Q9UBY9 170 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 COL6A5A8TX70 2615 aa11.28□□□□□ -0.6
TNFRSF1A-216ENST00000543995 OR2J3O76001 311 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 BRI3O95415 125 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 RHOGP84095 191 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 PDLIM3Q53GG5 364 aaPredicted RBP11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SLC25A24Q6NUK1 477 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 GSG1LQ6UXU4 331 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ZNF491Q8N8L2 437 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 KLHL30-AS1Q8NEE0 82 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR10C1Q96KK4 312 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 UBE2E2Q96LR5 201 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 RBKSQ9H477 322 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 HEYLQ9NQ87 328 aaPredicted RBP11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ALG5Q9Y673 324 aa11.27□□□□□ -0.61
TNFRSF1A-216ENST00000543995 A0A0G2JLM5 398 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 FAM223BA6NKX1 122 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 FAM90A26D6RGX4 464 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 GOSR2O14653 212 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SCGB1D2O95969 90 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 HIST1H1BP16401 226 aaKnown RBP11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 CDX1P47902 265 aaPredicted RBP11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 FAM223AQ8IWN6 122 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MYOZ3Q8TDC0 251 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR5B12Q96R08 314 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 THYN1Q9P016 225 aa11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 F11RQ9Y624 299 aaKnown RBP11.26□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C7orf66A4D0T2 115 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 INS-IGF2F8WCM5 200 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 M0QZ24 198 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 WRBO00258 174 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MED6O75586 246 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 IGHV3-11P01762 117 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 NKX2-1P43699 371 aaPredicted RBP11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SUB1P53999 127 aaKnown RBP eCLIP11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ATP5G2Q06055 141 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C2orf68Q2NKX9 166 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C18orf65Q6ZTR6 163 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ZBTB8BQ8NAP8 495 aaPredicted RBP11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 NECAP1Q8NC96 275 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR1L6Q8NGR2 347 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 DTD1Q8TEA8 209 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 USMG5Q96IX5 58 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 FANCD2OSQ96PS1 177 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 P2RX4Q99571 388 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MAGT1Q9H0U3 335 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 FBXL7Q9UJT9 491 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 IGLV11-55A0A075B6I3 123 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 TRBV9A0A0B4J1U6 114 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ADARB2-AS1A8MUL3 147 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 KIAA0141Q14154 515 aaPredicted RBP11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C15orf32Q32M92 178 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C8orf86Q6ZUL3 223 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ZNF114Q8NC26 417 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR4D5Q8NGN0 318 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR1P1Q8NH06 330 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C4orf3Q8WVX3 66 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C2orf50Q96LR7 162 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 GNB4Q9HAV0 340 aa11.25□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SYNGR2O43760 224 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 NDUFB8O95169 186 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 IAPPP10997 89 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 HTR2BP41595 481 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SLC24A4Q8NFF2 622 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR4F17Q8NGA8 305 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MISP3Q96FF7 219 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 OR4F4Q96R69 305 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 DMRT1Q9Y5R6 373 aa11.24□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SIX6O95475 246 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 IFNA10P01566 189 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 RNASE2P10153 161 aaKnown RBP11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MFAP2P55001 183 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 POLR2GP62487 172 aaKnown RBP eCLIP11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ID3Q02535 119 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 EXOSC2Q13868 293 aaKnown RBP11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 DEFB136Q30KP8 78 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 C11orf87Q6NUJ2 197 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 PINX1Q96BK5 328 aaKnown RBP11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 CIB3Q96Q77 187 aaPredicted RBP11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MGAT4CQ9UBM8 478 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 S4R3C0 116 aa11.23□□□□□ -0.61
TNFRSF1A-216ENST00000543995 ANKRD34BA5PLL1 514 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 SSSCA1O60232 199 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 LGALS1P09382 135 aaKnown RBP11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 KLK9Q2XQG4 91 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 CXorf58Q96LI9 332 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 MED28Q9H204 178 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 KLK9Q9UKQ9 250 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 U3KQ87 197 aa11.22□□□□□ -0.61
TNFRSF1A-216ENST00000543995 IGHV3-21A0A0B4J1V1 117 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms