RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 CYCSP99999 105 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 TNFRSF9Q07011 255 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 KHDC1LQ5JSQ8 128 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 ASPHD1Q5U4P2 390 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 OR2C3Q8N628 320 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 CXorf58Q96LI9 332 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 ATP6V0BQ99437 205 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 CITED2Q99967 270 aaPredicted RBP13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 U3KQ87 197 aa13.68□□□□□ -0.22
CLSTN3-210ENST00000540931 TRBV9A0A0B4J1U6 114 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 A0A0G2JRQ6 117 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 HMX3A6NHT5 357 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 PITX3O75364 302 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 RUNX1Q01196 453 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 Q6ZRM9 215 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 ZNF491Q8N8L2 437 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 C4orf3Q8WVX3 66 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 SEC22CQ9BRL7 303 aa13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 GAR1Q9NY12 217 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 F11RQ9Y624 299 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-210ENST00000540931 NUDT19A8MXV4 375 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 E7EUB6 86 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 WRBO00258 174 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 SOX15O60248 233 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 ATP5G2Q06055 141 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 GSG1LQ6UXU4 331 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 UXS1Q8NBZ7 420 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 OR52B4Q8NGK2 314 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 HEYLQ9NQ87 328 aaPredicted RBP13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 PRR13Q9NZ81 148 aa13.66□□□□□ -0.22
CLSTN3-210ENST00000540931 CGB1A6NKQ9 187 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 SSNA1O43805 119 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 RPLP1P05386 114 aaKnown RBP13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 AREGP15514 252 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 NKX2-1P43699 371 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 WT1-ASQ06250 92 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 OXA1LQ15070 435 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 TATDN3Q17R31 274 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 IZUMO4Q1ZYL8 232 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 IAH1Q2TAA2 248 aaPredicted RBP13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 TCTEX1D4Q5JR98 221 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 OR10W1Q8NGF6 305 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 VN1R17PQ8TDU5 208 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 DTD1Q8TEA8 209 aa13.65□□□□□ -0.22
CLSTN3-210ENST00000540931 TET2Q6N021 2002 aaPredicted RBP13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 IGLV11-55A0A075B6I3 123 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 TRBV7-1A0A0A6YYK4 115 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 A0A1B0GW64 132 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 C7orf66A4D0T2 115 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 C5orf51A6NDU8 294 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 SCGB2A1O75556 95 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 ADAP1O75689 374 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 SCAF4O95104 1147 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 APELAP0DMC3 54 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 KRTAP10-3P60369 221 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 RHOGP84095 191 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 EXOSC2Q13868 293 aaKnown RBP13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 KLHL30-AS1Q8NEE0 82 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 C2orf50Q96LR7 162 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 MS4A10Q96PG2 267 aa13.64□□□□□ -0.23
CLSTN3-210ENST00000540931 SYNGR2O43760 224 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 LGALS1P09382 135 aaKnown RBP13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 MYOD1P15172 320 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 ID3Q02535 119 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 ETFRF1Q6IPR1 90 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 SLC25A24Q6NUK1 477 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 C10orf99Q6UWK7 81 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 C11orf44Q8N8P7 122 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 ASB13Q8WXK3 278 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 EEF1AKMT3Q96AZ1 226 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 KLK15Q9H2R5 256 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 RANGRFQ9HD47 186 aaPredicted RBP13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 FBXL7Q9UJT9 491 aa13.63□□□□□ -0.23
CLSTN3-210ENST00000540931 RPS10-NUDT3A0A1W2PQS6 291 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 FAM25EA8MYX2 175 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 PVALBP20472 110 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 MYCNOSP40205 109 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 TAS2R30P59541 319 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 RAB11AP62491 216 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 NSUN5P1Q3KNT7 163 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 C2orf83Q53S99 150 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 ZBTB8BQ8NAP8 495 aaPredicted RBP13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 SLC24A4Q8NFF2 622 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 OR4D5Q8NGN0 318 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 RNASEH2CQ8TDP1 164 aaKnown RBP13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 RAB40CQ96S21 281 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 P2RX4Q99571 388 aa13.62□□□□□ -0.23
CLSTN3-210ENST00000540931 ZP3P21754 424 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 KIAA0141Q14154 515 aaPredicted RBP13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 C15orf32Q32M92 178 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 BSXQ3C1V8 233 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 ZNF343Q6P1L6 599 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 DPF1Q92782 380 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 FANCD2OSQ96PS1 177 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 TXN2Q99757 166 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 RBKSQ9H477 322 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 GSKIPQ9P0R6 139 aa13.61□□□□□ -0.23
CLSTN3-210ENST00000540931 PKD1L1Q8TDX9 2849 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 I3L521 148 aa13.6□□□□□ -0.23
CLSTN3-210ENST00000540931 OR2J3O76001 311 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 102.3 ms