RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-208	ENST00000540447	CTHRC1	Q96CG8	243 aa		7.4	□□□□□ -1.23
YBX3-208	ENST00000540447	TM4SF19	Q96DZ7	209 aa		7.4	□□□□□ -1.23
YBX3-208	ENST00000540447	DUX4L9	Q6RFH8	374 aa	Predicted RBP	7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	DEFB125	Q8N687	156 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	NABP1	Q96AH0	204 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	RGPD1	P0DJD0	1748 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	CNTFR	P26992	372 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	C16orf92	Q96LL3	132 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	C1QTNF5	Q9BXJ0	243 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	ANKRD31	Q8N7Z5	1873 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	DEPP	Q9NTK1	212 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	CAMTA1	Q9Y6Y1	1673 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	NPIPB11	E5RHQ5	1161 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	TM2D1	Q9BX74	207 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	DLL3	Q9NYJ7	618 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	GNG5	P63218	68 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	ID3	Q02535	119 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	FAM74A4	Q5TZK3	123 aa		7.39	□□□□□ -1.23
YBX3-208	ENST00000540447	LOC102723996	A0A087X1L8	192 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	FOXI3	A8MTJ6	420 aa	Predicted RBP	7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	NGFR	P08138	427 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	GLRX	P35754	106 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	ZNF319	Q9P2F9	582 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	RFNG	Q9Y644	331 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	SPINT1	O43278	529 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	ZC2HC1B	Q5TFG8	222 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	SCN8A	Q9UQD0	1980 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	RBM3	P98179	157 aa	Known RBP	7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	PRSS53	Q2L4Q9	553 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	TDH	Q8IZJ6	230 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	REG1B	P48304	166 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	TNFAIP6	P98066	277 aa	Predicted RBP	7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	ORMDL2	Q53FV1	153 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	CCDC144NL	Q6NUI1	221 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	SF3B5	Q9BWJ5	86 aa	Known RBP	7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	TRPM3	Q9HCF6	1732 aa	Predicted RBP	7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	CRYBG1	Q9Y4K1	1723 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	LYL1	P12980	280 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	IL11	P20809	199 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	ID1	P41134	155 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	C8orf86	Q6ZUL3	223 aa		7.38	□□□□□ -1.23
YBX3-208	ENST00000540447	KLF13	Q9Y2Y9	288 aa	Predicted RBP	7.38	□□□□□ -1.23
YBX3-208	ENST00000540447		M0R381	172 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	CSRP3	P50461	194 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	MRPS21	P82921	87 aa	Known RBP	7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	CT83	Q5H943	113 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	LINC01465	Q8N7H1	131 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447		Q9H3A6	140 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	LY96	Q9Y6Y9	160 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	IGKV3D-15	A0A087WSY6	115 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	IGKV3-15	P01624	115 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	PRR31	Q5SQ13	230 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	SIGLEC12	Q96PQ1	595 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	GFER	P55789	205 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	NUP35	Q8NFH5	326 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	HRK	O00198	91 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	TMPRSS2	O15393	492 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	PPIF	P30405	207 aa	Known RBP	7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	DEFB132	Q7Z7B7	95 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	NCR2	O95944	276 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	VEGFB	P49765	207 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	FXYD7	P58549	80 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	SPSB3	Q6PJ21	355 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	C16orf54	Q6UWD8	224 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	C16orf47	Q6ZP98	133 aa	Predicted RBP	7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	TEX45	Q8NA69	505 aa		7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	PNRC2	Q9NPJ4	139 aa	Known RBP	7.37	□□□□□ -1.23
YBX3-208	ENST00000540447	LOC101059948	A0A1B0GTJ6	334 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IGKV1D-16	P01601	117 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IGHV3-48	P01763	117 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	C1QL2	Q7Z5L3	287 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	OR9G1	Q8NH87	305 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	CLUHP3	Q96NS8	147 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IFI27L2	Q9H2X8	130 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447		D6R8Y8	96 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	ZNF138	P52744	262 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	CRYBA2	P53672	197 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447		Q6ZNB5	142 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	SAXO1	Q8IYX7	474 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	ANKRD29	Q8N6D5	301 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	C18orf32	Q8TCD1	76 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	GFI1	Q99684	422 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447		V9GYY9	64 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	ZNF142	P52746	1687 aa	Predicted RBP	7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IGKV3D-11	A0A0A0MRZ8	115 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	SS18L1	O75177	396 aa	Predicted RBP	7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IGKV3-11	P04433	115 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	LAGE3	Q14657	143 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	PRSS57	Q6UWY2	283 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	AMTN	Q6UX39	209 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	SH2D6	Q7Z4S9	175 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	R3HDML	Q9H3Y0	253 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	PRSS29P	A6NIE9	313 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IGFBP3	P17936	291 aa	Predicted RBP	7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	LHFPL6	Q9Y693	200 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	TMEM229A	B2RXF0	380 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	IL18BP	O95998	194 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	WNT2	P09544	360 aa		7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	SAA1	P0DJI8	122 aa	Predicted RBP	7.36	□□□□□ -1.23
YBX3-208	ENST00000540447	SUPT4H1	P63272	117 aa	Known RBP	7.36	□□□□□ -1.23

Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms