RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 NDUFB3O43676 98 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 HPRT1P00492 218 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 GCGP01275 180 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 KIR2DS2P43631 304 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 RAB9AP51151 201 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 RPL31P62899 125 aaKnown RBP7.93□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM267Q0VDI3 215 aaPredicted RBP7.93□□□□□ -1.14
CLIP1-212ENST00000540304 ZNF672Q499Z4 452 aaPredicted RBP7.93□□□□□ -1.14
CLIP1-212ENST00000540304 FBLN7Q53RD9 439 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM177Q53S58 311 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 MRPL41Q8IXM3 137 aaKnown RBP7.93□□□□□ -1.14
CLIP1-212ENST00000540304 S1PR3Q99500 378 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 RBKSQ9H477 322 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 RPUSD1Q9UJJ7 312 aaKnown RBP7.93□□□□□ -1.14
CLIP1-212ENST00000540304 ARFGEF3Q5TH69 2177 aa7.93□□□□□ -1.14
CLIP1-212ENST00000540304 SAA2-SAA4A0A096LPE2 208 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 RBMXL2O75526 392 aaKnown RBP7.92□□□□□ -1.14
CLIP1-212ENST00000540304 C1QL1O75973 258 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 SAA2P0DJI9 122 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-212ENST00000540304 ATP6V0CP27449 155 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 PDLIM4P50479 330 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 LRRC10Q5BKY1 277 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 BTNL8Q6UX41 500 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 STPG4Q8N801 248 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 ABHD5Q8WTS1 349 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 DDB2Q92466 427 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM204Q9BSN7 226 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 STRAPQ9Y3F4 350 aaKnown RBP7.92□□□□□ -1.14
CLIP1-212ENST00000540304 A0A1B0GV50 99 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 FCN3O75636 299 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 MMP23AO75900 390 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 OR2C1O95371 312 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 CXCL1P09341 107 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 LOXP28300 417 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-212ENST00000540304 TFF3Q07654 80 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 GBGT1Q8N5D6 347 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 FRZBQ92765 325 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 GNPNAT1Q96EK6 184 aaPredicted RBP7.92□□□□□ -1.14
CLIP1-212ENST00000540304 ZNF714Q96N38 554 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 KAAG1Q9UBP8 84 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 RALYQ9UKM9 306 aaKnown RBP7.92□□□□□ -1.14
CLIP1-212ENST00000540304 HIVEP3Q5T1R4 2406 aa7.92□□□□□ -1.14
CLIP1-212ENST00000540304 FAM90A9PA6NNJ1 464 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 PRH1P02810 166 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 OR5G3P0C626 314 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 PPIAL4GP0DN37 164 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 THBS3P49746 956 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 ERVK-16P61578 105 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 HBG1P69891 147 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 HBG2P69892 147 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 C4orf17Q53FE4 359 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 SPANXN5Q5MJ07 72 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 LYPD2Q6UXB3 125 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM182Q6ZP80 229 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-212ENST00000540304 C1orf229Q6ZS94 237 aaPredicted RBP7.91□□□□□ -1.14
CLIP1-212ENST00000540304 PKD1L2Q7Z442 2459 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 OR2G3Q8NGZ4 309 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 OR4S2Q8NH73 311 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 LYPD6BQ8NI32 183 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 ADTRPQ96IZ2 230 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 KPTNQ9Y664 436 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 PPIAL4CA0A0B4J2A2 164 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM8BA6NDV4 472 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 UMAD1C9J7I0 102 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 K7ERU9 68 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 ATP5J2P56134 94 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 TDRG1Q3Y452 100 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM200BQ69YZ2 307 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 ZNF343Q6P1L6 599 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 SLC25A48Q6ZT89 311 aaKnown RBP7.91□□□□□ -1.14
CLIP1-212ENST00000540304 H1FXQ92522 213 aaKnown RBP7.91□□□□□ -1.14
CLIP1-212ENST00000540304 CTSZQ9UBR2 303 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 CSMD1Q96PZ7 3565 aa7.91□□□□□ -1.14
CLIP1-212ENST00000540304 AKAP6Q13023 2319 aa7.9□□□□□ -1.14
CLIP1-212ENST00000540304 IFNA5P01569 189 aa7.9□□□□□ -1.14
CLIP1-212ENST00000540304 PPOXP50336 477 aa7.9□□□□□ -1.14
CLIP1-212ENST00000540304 HAPLN4Q86UW8 402 aa7.9□□□□□ -1.14
CLIP1-212ENST00000540304 TMEM186Q96B77 213 aa7.9□□□□□ -1.14
CLIP1-212ENST00000540304 ANAPC16Q96DE5 110 aa7.9□□□□□ -1.14
CLIP1-212ENST00000540304 CIB3Q96Q77 187 aaPredicted RBP7.9□□□□□ -1.14
CLIP1-212ENST00000540304 OR9G9P0C7N8 305 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 CCL3L1P16619 93 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 DVL1P1P54792 670 aaPredicted RBP7.9□□□□□ -1.15
CLIP1-212ENST00000540304 RPS16P62249 146 aaKnown RBP7.9□□□□□ -1.15
CLIP1-212ENST00000540304 ARL16Q0P5N6 197 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 IQCJQ1A5X6 159 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 SPINK9Q5DT21 86 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 PRR27Q6MZM9 219 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 TMEM14EPQ6UXP3 125 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 Q8WTZ3 238 aa7.9□□□□□ -1.15
CLIP1-212ENST00000540304 CEBPZOSA8MTT3 80 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 ZG16O60844 167 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 TSPAN15O95858 294 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 RUNX1Q01196 453 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 COMMD1Q8N668 190 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 ZNF525Q8N782 197 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 RAB39BQ96DA2 213 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 QTRT1Q9BXR0 403 aaKnown RBP7.89□□□□□ -1.15
CLIP1-212ENST00000540304 ZNRD1Q9P1U0 126 aa7.89□□□□□ -1.15
CLIP1-212ENST00000540304 SAP30O75446 220 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 133.6 ms