RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 RP1L1Q8IWN7 2480 aaPredicted RBP9.26□□□□□ -0.93
SYNE1-237ENST00000539504 J3QR06 171 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 BMPR1BO00238 502 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 HYPMO75409 117 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 AREGP15514 252 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 Q56UQ5 140 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 OR10J3Q5JRS4 329 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 PRR31Q5SQ13 230 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 VHLLQ6RSH7 139 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 IFI27L2Q9H2X8 130 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 CDC42EP3Q9UKI2 254 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 KMT2EQ8IZD2 1858 aa9.26□□□□□ -0.93
SYNE1-237ENST00000539504 MGST3O14880 152 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 CRYABP02511 175 aaKnown RBP9.25□□□□□ -0.93
SYNE1-237ENST00000539504 KIR2DS2P43631 304 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 MFAP2P55001 183 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 DEFB108BQ8NET1 73 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 OSTCQ9NRP0 149 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 CALYQ9NYX4 217 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 TNCP24821 2201 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 CECR9P0C854 216 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 IGLC2P0DOY2 106 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 IGLC3P0DOY3 106 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 CAMPP49913 170 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 MLANAQ16655 118 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 COX19Q49B96 90 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 UTF1Q5T230 341 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 RNASEKQ6P5S7 137 aaKnown RBP9.25□□□□□ -0.93
SYNE1-237ENST00000539504 IGKV1D-17A0A075B6S4 117 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 PRRX1P54821 245 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 UBE2L3P68036 154 aaKnown RBP9.25□□□□□ -0.93
SYNE1-237ENST00000539504 MAJINQ3KP22 176 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 FAM201AQ5SY85 155 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 Q6ZVH6 145 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 FAM214BQ7L5A3 538 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 LINC00479Q96M42 142 aa9.25□□□□□ -0.93
SYNE1-237ENST00000539504 HEATR1Q9H583 2144 aaKnown RBP9.24□□□□□ -0.93
SYNE1-237ENST00000539504 GGTLC3B5MD39 225 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 TSKUQ8WUA8 353 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 ZNF355PQ9NSJ1 428 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 SAA2-SAA4A0A096LPE2 208 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 TRGV8A0A0C4DH27 118 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 M0R2Z0 102 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 LINC00869P0C866 280 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 SAA2P0DJI9 122 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-237ENST00000539504 PRR20EP86478 221 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 PRR20CP86479 221 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 PRR20DP86480 221 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 PRR20BP86481 221 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 PRR20AP86496 221 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 MOGAT3Q86VF5 341 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 ZNF439Q8NDP4 499 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 FER1L6-AS2Q96M78 137 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 LNP1A1A4G5 178 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 VWA1Q6PCB0 445 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 Q6ZT83 130 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 Q8N976 141 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 OR9G1Q8NH87 305 aa9.24□□□□□ -0.93
SYNE1-237ENST00000539504 SLC25A10Q9UBX3 287 aaPredicted RBP9.24□□□□□ -0.93
SYNE1-237ENST00000539504 TRAV5A0A0B4J249 113 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 ISLRO14498 428 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 SPRY3O43610 288 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 ACP1P24666 158 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 GPR6P46095 362 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-237ENST00000539504 AARDQ4LEZ3 155 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 UNQ5815/PRO19632Q6UWF5 114 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 C1orf229Q6ZS94 237 aaPredicted RBP9.23□□□□□ -0.93
SYNE1-237ENST00000539504 IDI2-AS1Q9NZ38 188 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 RPH3ALQ9UNE2 315 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 MZT1Q08AG7 82 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 SLAQ13239 276 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 CT45A1Q5HYN5 189 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 NIT1Q86X76 327 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 TMEM178AQ8NBL3 297 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 MDS2Q8NDY4 140 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 CT45A3Q8NHU0 189 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 FAM168AQ92567 244 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 CLEC7AQ9BXN2 247 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 PCSK5Q92824 1860 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 C21orf140B9A014 251 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 C8orf88P0DMB2 117 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 C19orf35Q6ZS72 473 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 BET1LQ9NYM9 111 aa9.23□□□□□ -0.93
SYNE1-237ENST00000539504 IZUMO1RA6ND01 250 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 CTRLP40313 264 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 LOXL3P58215 753 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 RND1Q92730 232 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 SGK494Q96LW2 274 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 SSBP4Q9BWG4 385 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-237ENST00000539504 PRNDQ9UKY0 176 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 FOXA2Q9Y261 457 aaPredicted RBP9.22□□□□□ -0.93
SYNE1-237ENST00000539504 IGHV3-48P01763 117 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 TDGF1P13385 188 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 TNXAQ16473 311 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 NEUROG1Q92886 237 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 OR2V2Q96R30 315 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 TMEM14BQ9NUH8 114 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 PPOXP50336 477 aa9.22□□□□□ -0.93
SYNE1-237ENST00000539504 RPL8P62917 257 aaKnown RBP9.22□□□□□ -0.93
SYNE1-237ENST00000539504 FAM90A1Q86YD7 464 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms