RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	IMUP	Q9GZP8	106 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	CST11	Q9H112	138 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	KCNK15	Q9H427	330 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	GAGE2D	Q9UEU5	116 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TCF19	Q9Y242	345 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	VSIG4	Q9Y279	399 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110		V9GY05	133 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	KCP	Q6ZWJ8	1503 aa		4.54	□□□□□ -1.68
CD44-231	ENST00000531110	TRAV5	A0A0B4J249	113 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	PIGBOS1	A0A0B4J2F0	54 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	C16orf97	H3BN30	126 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	SYS1-DBNDD2	H3BUS1	97 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	ISLR	O14498	428 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	PTGES	O14684	152 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF737	O75373	536 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF324	O75467	553 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-231	ENST00000531110	DEDD	O75618	318 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	IGLV2-11	P01706	119 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	HPN	P05981	417 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	BCL2	P10415	239 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	NSG1	P42857	185 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	RPS24	P62847	133 aa	Known RBP	4.53	□□□□□ -1.68
CD44-231	ENST00000531110	CXCL9	Q07325	125 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	KLF17	Q5JT82	389 aa	Predicted RBP	4.53	□□□□□ -1.68
CD44-231	ENST00000531110	CDC42EP5	Q6NZY7	148 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	PAQR6	Q6TCH4	344 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	ZNF695	Q8IW36	515 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	C1orf158	Q8N1D5	194 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	TMEM256	Q8N2U0	113 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	GATD1	Q8NB37	220 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	SUMF1	Q8NBK3	374 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	VN1R2	Q8NFZ6	395 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	OR1L8	Q8NGR8	309 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	OR10G6	Q8NH81	332 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	PIFO	Q8TCI5	191 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	ST6GALNAC6	Q969X2	333 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	RAB37	Q96AX2	223 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	RASL11B	Q9BPW5	248 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	C16orf70	Q9BSU1	422 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	NIN	Q8N4C6	2090 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	NUP205	Q92621	2012 aa		4.53	□□□□□ -1.68
CD44-231	ENST00000531110	CPAMD8	Q8IZJ3	1885 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	C15orf62	A8K5M9	175 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	OVOL1	O14753	267 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	NPFF	O15130	113 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	SOCS1	O15524	211 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	CXorf1	O96002	111 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	NAPSA	O96009	420 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	IGHV4-39	P01824	125 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	TTR	P02766	147 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	PRH1	P02810	166 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	OR5AL1	P0C617	328 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	C3orf79	P0CE67	100 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	IGLL1	P15814	213 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	GABRG2	P18507	467 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	VDAC1	P21796	283 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	FCGR2C	P31995	323 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	PRDX2	P32119	198 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	TMEM50B	P56557	158 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	KRTAP10-9	P60411	292 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	PPP1CB	P62140	327 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	RPS4X	P62701	263 aa	Known RBP	4.52	□□□□□ -1.69
CD44-231	ENST00000531110	ZNF117	Q03924	483 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	LAMTOR4	Q0VGL1	99 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	FUT5	Q11128	374 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	CD226	Q15762	336 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	ZNF74	Q16587	644 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	MEIG1	Q5JSS6	88 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	DCAF12	Q5T6F0	453 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	TRIM40	Q6P9F5	258 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	SSX8	Q7RTT4	187 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	ANKRD37	Q7Z713	158 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	ATOH7	Q8N100	152 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	MYOZ3	Q8TDC0	251 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	GTSF1	Q8WW33	167 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	RASL10A	Q92737	203 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	OR2A5	Q96R48	311 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	RARRES2	Q99969	163 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	BCL2L10	Q9HD36	194 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	PCTP	Q9UKL6	214 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	DENND4C	Q5VZ89	1909 aa		4.52	□□□□□ -1.69
CD44-231	ENST00000531110	HEATR5A	Q86XA9	2040 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	COL11A1	P12107	1806 aa	Predicted RBP	4.51	□□□□□ -1.69
CD44-231	ENST00000531110		M0R2P5	195 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	FCN1	O00602	326 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	UQCRQ	O14949	82 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	SERF1A	O75920	110 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	NDUFA7	O95182	113 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	REN	P00797	406 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	CA1	P00915	261 aa	Predicted RBP	4.51	□□□□□ -1.69
CD44-231	ENST00000531110	CA2	P00918	260 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	COX8A	P10176	69 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	RPL7	P18124	248 aa	Known RBP	4.51	□□□□□ -1.69
CD44-231	ENST00000531110	EDNRA	P25101	427 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	IL3RA	P26951	378 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	FABP6	P51161	128 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	CRYBA2	P53672	197 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	CLDN6	P56747	220 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	PPP1R1A	Q13522	171 aa		4.51	□□□□□ -1.69
CD44-231	ENST00000531110	ATXN7L3	Q14CW9	347 aa	Predicted RBP	4.51	□□□□□ -1.69

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