RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 KCNIP4Q6PIL6 250 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 Q6ZSR9 355 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SLC35F2Q8IXU6 374 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ZNF615Q8N8J6 731 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ADAD2Q8NCV1 583 aaKnown RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 OR4C16Q8NGL9 310 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 OR9G4Q8NGQ1 327 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 OR10Q1Q8NGQ4 319 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 OR4C3Q8NH37 302 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 LGALS14Q8TCE9 139 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SLC38A5Q8WUX1 472 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 AQP3Q92482 292 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 EMG1Q92979 244 aaKnown RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 RNF183Q96D59 192 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 PMCHL2Q9BQD1 86 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SAMD10Q9BYL1 202 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 WDR61Q9GZS3 305 aaKnown RBP4.49□□□□□ -1.69
NUP54-218ENST00000515460 RERGLQ9H628 205 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 UBTD1Q9HAC8 227 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 ST20Q9HBF5 79 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 SLC25A37Q9NYZ2 338 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 FAM215AQ9Y5M1 114 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 LIPGQ9Y5X9 500 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 DNAH1Q9P2D7 4330 aa4.49□□□□□ -1.69
NUP54-218ENST00000515460 MEIS3P1A6NDR6 274 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 OR2T8A6NH00 312 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 OR4C45A6NMZ5 311 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 CD300LBA8K4G0 201 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 FABP5P3A8MUU1 101 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 HMGB3O15347 200 aaKnown RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 WISP3O95389 354 aaPredicted RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 PPP1R3DO95685 299 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 HRASP01112 189 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PRSS2P07478 247 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PFN1P07737 140 aaKnown RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 C8orf88P0DMB2 117 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 ALOX5APP20292 161 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PRPH2P23942 346 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 HTR1DP28221 377 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PYCR1P32322 319 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 CFHR2P36980 270 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 MAGEA5P43359 124 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 P2RY1P47900 373 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 SLC6A12P48065 614 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 LHX2P50458 406 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 SSR4P51571 173 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 FOXA1P55317 472 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 TAS2R46P59540 309 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 YPEL3P61236 119 aaPredicted RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 RPL8P62917 257 aaKnown RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 OR8B8Q15620 311 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 ARL9Q6T311 187 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PAQR6Q6TCH4 344 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 DPPA3Q6W0C5 159 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 RBPMS2Q6ZRY4 209 aaKnown RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 C19orf35Q6ZS72 473 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 CEACAM19Q7Z692 300 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 NR2C2APQ86WQ0 139 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 CDC20BQ86Y33 519 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 OR4N5Q8IXE1 308 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 SAXO1Q8IYX7 474 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PTGR2Q8N8N7 351 aaPredicted RBP4.48□□□□□ -1.69
NUP54-218ENST00000515460 TMEM229BQ8NBD8 167 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 OR8S1Q8NH09 359 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 ESAMQ96AP7 390 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 WDR34Q96EX3 536 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 OXGR1Q96P68 337 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 DGAT2Q96PD7 388 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 UHRF2Q96PU4 802 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 RASL10BQ96S79 203 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 HSPB9Q9BQS6 159 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 TTTY12Q9BZ98 90 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 NMNAT2Q9BZQ4 307 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 OR51I2Q9H344 312 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 IKZF5Q9H5V7 419 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PELI2Q9HAT8 420 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PROK2Q9HC23 129 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 GPR84Q9NQS5 396 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 PRTFDC1Q9NRG1 225 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 KLRF1Q9NZS2 232 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 TENM2Q9NT68 2774 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 DOCK10Q96BY6 2186 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 HERC1Q15751 4861 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 USF3Q68DE3 2245 aa4.48□□□□□ -1.69
NUP54-218ENST00000515460 KIAA1109Q2LD37 5005 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 TRAV9-1A0A075B6T8 112 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 SAA2-SAA4A0A096LPE2 208 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 A0A1B0GX51 115 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 F5H768 121 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 H3BRM9 83 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 M0R2Z0 102 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 RS1O15537 224 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 ZNF253O75346 499 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 CCL3P10147 92 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 MMP9P14780 707 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 HIST1H1CP16403 213 aaKnown RBP4.47□□□□□ -1.69
NUP54-218ENST00000515460 EVI2AP22794 236 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 MT3P25713 68 aa4.47□□□□□ -1.69
NUP54-218ENST00000515460 LIM2P55344 173 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms