RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 SLAQ13239 276 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 TMEM42Q69YG0 159 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 UCN2Q96RP3 112 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 JMJD8Q96S16 334 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 C21orf62Q9NYP8 219 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 TRGV11A0A075B6L2 103 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 IGHV3OR15-7A0A075B7D8 119 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 IQCF6A8MYZ5 107 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 THY1P04216 161 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 APELAP0DMC3 54 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 TMEM171Q8WVE6 324 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 UBL5Q9BZL1 73 aa9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 DUSP15Q9H1R2 295 aaPredicted RBP9.48□□□□□ -0.89
LIMCH1-217ENST00000512946 PRRC2BQ5JSZ5 2229 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 MYMXA0A1B0GTQ4 84 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 CD28P10747 220 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 EGR4Q05215 589 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 TFF3Q07654 80 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 TAL2Q16559 108 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 TMEM54Q969K7 222 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 LAMTOR3Q9UHA4 124 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 CXCL10P02778 98 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 SRD5A1P18405 259 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 LAIR2Q6ISS4 152 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 RFLNBQ8N5W9 214 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 SPSB2Q99619 263 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 SLC25A39Q9BZJ4 359 aaPredicted RBP9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 PSG8Q9UQ74 426 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 AHRRA9YTQ3 701 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 CDKN1BP46527 198 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 MIR17HGQ75NE6 70 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 FAM214BQ7L5A3 538 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 ZNF721Q8TF20 911 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 RNASE7Q9H1E1 156 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 SSC5DA1L4H1 1573 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 COL14A1Q05707 1796 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 DLG5Q8TDM6 1919 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 IGKV3OR2-268A0A0C4DH90 116 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 CXCL1P09341 107 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 CISD3P0C7P0 127 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 LINC00271P0C7V0 271 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 RBMY1FQ15415 496 aaKnown RBP9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 PRSS53Q2L4Q9 553 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 C9orf50Q5SZB4 431 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 SFTA2Q6UW10 78 aa9.47□□□□□ -0.89
LIMCH1-217ENST00000512946 C4AP0C0L4 1744 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 C4BP0C0L5 1744 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 PRR32B1ATL7 298 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 K7EP13 123 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 IL18BPO95998 194 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 PRSS12P56730 875 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 SRSF7Q16629 238 aaKnown RBP eCLIP9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 C9orf40Q8IXQ3 194 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 DPH3Q96FX2 82 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 AMELYQ99218 206 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 TMEM126AQ9H061 195 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A0J9YW62 118 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 A0A1W2PPV9 198 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 DTX2Q86UW9 622 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 OR5P3Q8WZ94 311 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 CFHR5Q9BXR6 569 aa9.46□□□□□ -0.89
LIMCH1-217ENST00000512946 GAGE12HA6NDE8 117 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 C9JAW5 83 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 F8WEM9 126 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 LEPROTO15243 131 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 LY6G6FQ5SQ64 297 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 FAM60AQ9NP50 221 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 K7EP34 96 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 NALCNQ8IZF0 1738 aa9.46□□□□□ -0.9
LIMCH1-217ENST00000512946 FAM90A27PA6NNH2 459 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 MYOD1P15172 320 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 PLAURQ03405 335 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 ITLN1Q8WWA0 313 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 TSSC4Q9Y5U2 329 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 MUC21A0A0G2JKD1 596 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 MUC21A0A140T8X8 626 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 OVOL1O14753 267 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 CCL3P10147 92 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 MUC21Q5SSG8 566 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 ACYP1P07311 99 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 DUTP33316 252 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 REG4Q9BYZ8 158 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 IGHV1-24A0A0C4DH33 117 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 TCRBV4S1A1TA0A5B7 111 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 SELLP14151 372 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 CCL1P22362 96 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 LINC01551Q86U37 167 aa9.45□□□□□ -0.9
LIMCH1-217ENST00000512946 GREM1O60565 184 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 GATD1Q8NB37 220 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 ZNF576Q9H609 170 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 PIK3C2AO00443 1686 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 C5P01031 1676 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 PRR33A8MZF0 331 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 A0A087X0K7 114 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 SAA1P0DJI8 122 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 BTCP35070 178 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 ZFP36L2P47974 494 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 LINC00158P58513 81 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 CD69Q07108 199 aa9.44□□□□□ -0.9
LIMCH1-217ENST00000512946 BHLHA9Q7RTU4 235 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms