RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 BAIAP2Q9UQB8 552 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 PKIGQ9Y2B9 76 aa1.32□□□□□ -2.2
HMGB1P28-201ENST00000507778 NAV1Q8NEY1 1877 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 SMARCA4P51532 1647 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 GOLGA6L19H0YKK7 550 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 LYPLA2O95372 231 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 IGKV1-5P01602 117 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 PMP2P02689 132 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 SERPINA6P08185 405 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 RPS17P08708 135 aaKnown RBP1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 RPL5P46777 297 aaKnown RBP1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 STX5Q13190 355 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 ZNF345Q14585 488 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 SPANXN3Q5MJ09 141 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 SPOPLQ6IQ16 392 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 LPCAT3Q6P1A2 487 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 ANKRD29Q8N6D5 301 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 DCUN1D1Q96GG9 259 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 PPP1R2P1Q96PQ5 205 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 FBXL12Q9NXK8 326 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 UBAP1Q9NZ09 502 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 LHFPL6Q9Y693 200 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 V9GYY5 206 aaPredicted RBP1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 PLB1Q6P1J6 1458 aa1.31□□□□□ -2.2
HMGB1P28-201ENST00000507778 PRRC2BQ5JSZ5 2229 aaKnown RBP1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 IGKV1D-43A0A0B4J1Z2 117 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 PQLC2LA1A4F0 135 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 FAAHO00519 579 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 RPP14O95059 124 aaKnown RBP1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 ANGP03950 147 aaKnown RBP1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 KISS1Q15726 138 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 KCNJ8Q15842 424 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 RGS21Q2M5E4 152 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 AAED1Q7RTV5 226 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 TMEM106AQ96A25 262 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 PPP1R14BQ96C90 147 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 SCGB3A1Q96QR1 104 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 ULBP3Q9BZM4 244 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 YIPF3Q9GZM5 350 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 TP73-AS1Q9UF72 201 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 TMEM56-RWDD3S4R434 201 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 MTUS2Q5JR59 1369 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 TONSLQ96HA7 1378 aa1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 WRNQ14191 1432 aaPredicted RBP eCLIP1.3□□□□□ -2.2
HMGB1P28-201ENST00000507778 DPRXA6NFQ7 191 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 KPNA3O00505 521 aaPredicted RBP1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 MRPS14O60783 128 aaKnown RBP1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 CLPSP04118 112 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 UBBP0CG47 229 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 ARL14EPLP0DKL9 152 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 MYL6P60660 151 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 ZNF439Q8NDP4 499 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 C8orf76Q96K31 380 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 TSPAN32Q96QS1 320 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 NIPSNAP1Q9BPW8 284 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 ADAT1Q9BUB4 502 aaKnown RBP1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 C11orf68Q9H3H3 251 aaKnown RBP1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 MRPL27Q9P0M9 148 aaKnown RBP1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 CKLFQ9UBR5 152 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 MYO3BQ8WXR4 1341 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 NUP155O75694 1391 aa1.29□□□□□ -2.2
HMGB1P28-201ENST00000507778 FN1P02751 2386 aaKnown RBP1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 IGKV2-40A0A087WW87 121 aaPredicted RBP1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 IGKV3D-7A0A0C4DH55 119 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 IGKV3OR2-268A0A0C4DH90 116 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 EXOC1LA0A1B0GW35 172 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 OR4C46A6NHA9 309 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 CRYZL1O95825 349 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 IGKV2D-40P01614 121 aaPredicted RBP1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 LYNX1P0DP58 116 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 RPS20P60866 119 aaKnown RBP1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 RUNX1Q01196 453 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 AESQ08117 197 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 UNQ6190/PRO20217Q6UXQ8 127 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 BPIFA4PQ86YQ2 179 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 WFDC11Q8NEX6 87 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 PFN4Q8NHR9 129 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 TOMM6Q96B49 74 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 GINS4Q9BRT9 223 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 MED9Q9NWA0 146 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 SOX21Q9Y651 276 aaPredicted RBP1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 TTC21AQ8NDW8 1320 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 SETD5Q9C0A6 1442 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 NUMA1Q14980 2115 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 KIAA2026Q5HYC2 2103 aa1.28□□□□□ -2.2
HMGB1P28-201ENST00000507778 CR1P17927 2039 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 HMCN1Q96RW7 5635 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 GLI3P10071 1580 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 TRAV9-1A0A075B6T8 112 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 TRAV26-2A0A0B4J265 109 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 TMEM212A6NML5 194 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 IFNA10P01566 189 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 TTRP02766 147 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 CDKN2CP42773 168 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 DEFA1P59665 94 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 CDK5R1Q15078 307 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 LCN15Q6UWW0 184 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 MIR17HGQ75NE6 70 aa1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 CLVS1Q8IUQ0 354 aaPredicted RBP1.27□□□□□ -2.21
HMGB1P28-201ENST00000507778 C10orf105Q8TEF2 133 aa1.27□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms