RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 FLVCR1-AS1Q8TAF5 88 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 SFRP2Q96HF1 295 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 PRSS22Q9GZN4 317 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 GRIFINA4D1Z8 144 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 RRHO14718 337 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BKO60814 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BJP06899 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BOP23527 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BBP33778 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BDP58876 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BCP62807 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 ICAM4Q14773 271 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST2H2BEQ16778 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.05□□□□□ -0.64
PTPRF-215ENST00000496447 MBNL2Q5VZF2 373 aaKnown RBP11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BHQ93079 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BNQ99877 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BMQ99879 126 aa11.05□□□□□ -0.64
PTPRF-215ENST00000496447 C17orf98A8MV24 154 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 SRIP30626 198 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 ADIPOQQ15848 244 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 C14orf144Q96I85 54 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 DERL1Q9BUN8 251 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 PROB1E7EW31 1015 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 IL6RP08887 468 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-215ENST00000496447 UNQ6494/PRO21346Q6UXR6 183 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 HIST3H2BBQ8N257 126 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 A0A0G2JK05 382 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 LYNX1G3V0Z9 82 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 SMIM13P0DJ93 91 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 LYNX1P0DP58 116 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 HEPN1Q6WQI6 88 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 ZCCHC24Q8N2G6 241 aaKnown RBP11.04□□□□□ -0.64
PTPRF-215ENST00000496447 VCX2Q9H322 139 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 STAG3L3P0CL85 134 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 GCHFRP30047 84 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 PRB3Q04118 309 aaPredicted RBP11.04□□□□□ -0.64
PTPRF-215ENST00000496447 KIR2DL4Q99706 377 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 TCF24Q7RTU0 167 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 TMEM170AQ8WVE7 144 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 DUX3Q96PT4 197 aa11.04□□□□□ -0.64
PTPRF-215ENST00000496447 SCN2AQ99250 2005 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 IGHV1-18A0A0C4DH31 117 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 SPTBP11277 2137 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 IGLV3-32A0A0A0MS00 114 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 SCGB1A1P11684 91 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 NBR2O15453 112 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 HIST1H2BLQ99880 126 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 KLK15Q9H2R5 256 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 IGHV3OR16-8A0A075B7F1 116 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 WBP1Q96G27 269 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 CACNA1EQ15878 2313 aa11.03□□□□□ -0.64
PTPRF-215ENST00000496447 LDLRAD2Q5SZI1 272 aa11.02□□□□□ -0.64
PTPRF-215ENST00000496447 TEX45Q8NA69 505 aa11.02□□□□□ -0.64
PTPRF-215ENST00000496447 MSGN1A6NI15 193 aa11.02□□□□□ -0.64
PTPRF-215ENST00000496447 F8VVB4 439 aa11.02□□□□□ -0.64
PTPRF-215ENST00000496447 F8VWA3 439 aa11.02□□□□□ -0.64
PTPRF-215ENST00000496447 ATOH7Q8N100 152 aa11.02□□□□□ -0.64
PTPRF-215ENST00000496447 TRAV9-1A0A075B6T8 112 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 GNLYP22749 145 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 TMEM70Q9BUB7 260 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 WNT10AQ9GZT5 417 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 GEMIN7Q9H840 131 aaKnown RBP11.02□□□□□ -0.65
PTPRF-215ENST00000496447 ARID2Q68CP9 1835 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 SHISA3A0PJX4 238 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 COX6CP09669 75 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 HTN3P15516 51 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 SIGMAR1Q99720 223 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 PSMG3Q9BT73 122 aaPredicted RBP11.02□□□□□ -0.65
PTPRF-215ENST00000496447 MTCL1Q9Y4B5 1905 aaKnown RBP11.02□□□□□ -0.65
PTPRF-215ENST00000496447 H7C2G1 150 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 LGALS3P17931 250 aaKnown RBP11.02□□□□□ -0.65
PTPRF-215ENST00000496447 C2orf68Q2NKX9 166 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 TMEM133Q9H2Q1 129 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 PSME4Q14997 1843 aa11.02□□□□□ -0.65
PTPRF-215ENST00000496447 DSCR9P59020 149 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 MEIG1Q5JSS6 88 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 TBL2Q9Y4P3 447 aaKnown RBP11.01□□□□□ -0.65
PTPRF-215ENST00000496447 PATJQ8NI35 1801 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 TBX6O95947 436 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-215ENST00000496447 TIMP3P35625 211 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 ASIPP42127 132 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 EMP1P54849 157 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 WDR82Q6UXN9 313 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 PLPPR1Q8TBJ4 325 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 JKAMPQ9P055 326 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 CACNA1IQ9P0X4 2223 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 SLC17A3O00476 420 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 PPP1R17O96001 155 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 NBEAP1P0C6P0 100 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 FOXF2Q12947 444 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 LINC01587Q99440 93 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 MESP1Q9BRJ9 268 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 MRPL13Q9BYD1 178 aaKnown RBP11.01□□□□□ -0.65
PTPRF-215ENST00000496447 SAA2-SAA4A0A096LPE2 208 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 LOC107984156A0A0G2JMH3 177 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 H7C1H1 209 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 SAA2P0DJI9 122 aaPredicted RBP11.01□□□□□ -0.65
PTPRF-215ENST00000496447 IGFBP2P18065 325 aa11.01□□□□□ -0.65
PTPRF-215ENST00000496447 SRSF3P84103 164 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms