RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, human

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMC4-223	ENST00000493695	MRPL30	Q8TCC3	161 aa	Known RBP	0.82	□□□□□ -2.28
SMC4-223	ENST00000493695	DDI1	Q8WTU0	396 aa		0.82	□□□□□ -2.28
SMC4-223	ENST00000493695	RASSF5	Q8WWW0	418 aa		0.82	□□□□□ -2.28
SMC4-223	ENST00000493695	DERL1	Q9BUN8	251 aa		0.82	□□□□□ -2.28
SMC4-223	ENST00000493695	WDR61	Q9GZS3	305 aa	Known RBP	0.82	□□□□□ -2.28
SMC4-223	ENST00000493695	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	EEF1E1-BLOC1S5	C9J1V9	151 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	IFNA5	P01569	189 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	PMP2	P02689	132 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	CALB1	P05937	261 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	NKX2-5	P52952	324 aa	Predicted RBP	0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	IFITM2	Q01629	132 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	PLCXD2	Q0VAA5	305 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	GRK1	Q15835	563 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	AADACL3	Q5VUY0	350 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	ZNF826P	Q6ZT77	177 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	OTUD6B	Q8N6M0	293 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	OR13C4	Q8NGS5	318 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	KLK6	Q92876	244 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	TP73-AS1	Q9UF72	201 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	NOSIP	Q9Y314	301 aa	Known RBP	0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	LSM5	Q9Y4Y9	91 aa	Known RBP	0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	HEATR5A	Q86XA9	2040 aa		0.81	□□□□□ -2.28
SMC4-223	ENST00000493695	HEATR5B	Q9P2D3	2071 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	TOPBP1	Q92547	1522 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	KCNK1	O00180	336 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	IL9	P15248	144 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	RPS4Y1	P22090	263 aa	Known RBP	0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	STX5	Q13190	355 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	ZNF846	Q147U1	533 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	IMPG1	Q17R60	797 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	OR52E6	Q96RD3	313 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	FAM96A	Q9H5X1	160 aa		0.8	□□□□□ -2.28
SMC4-223	ENST00000493695	MYOF	Q9NZM1	2061 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	NOTCH1	P46531	2555 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	INTS1	Q8N201	2190 aa	Known RBP	0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	AHSA1	O95433	338 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H1T	P22492	207 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BO	P23527	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BB	P33778	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BD	P58876	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BC	P62807	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	SURF2	Q15527	256 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST2H2BE	Q16778	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	LPCAT4	Q643R3	524 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	RPL22L1	Q6P5R6	122 aa	Known RBP	0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	DEFB128	Q7Z7B8	93 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	OR51D1	Q8NGF3	324 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	OR5B17	Q8NGF7	314 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BH	Q93079	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BN	Q99877	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	HIST1H2BM	Q99879	126 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	PARD6G	Q9BYG4	376 aa	Predicted RBP	0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	REG4	Q9BYZ8	158 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	CMTM6	Q9NX76	183 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	GUCA1B	Q9UMX6	200 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	NUP155	O75694	1391 aa		0.79	□□□□□ -2.28
SMC4-223	ENST00000493695	CACNA1B	Q00975	2339 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	SHBG	P04278	402 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	CTSD	P07339	412 aa	Predicted RBP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	SNRPD2	P62316	118 aa	Known RBP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	RUNX1	Q01196	453 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	ACOT6	Q3I5F7	207 aa	Predicted RBP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	SPANXN3	Q5MJ09	141 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	LCN15	Q6UWW0	184 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695		Q6ZQT0	140 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	C20orf196	Q8IYI0	205 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	C12orf29	Q8N999	325 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	ZNF565	Q8N9K5	539 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	TERB2	Q8NHR7	220 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	IMP4	Q96G21	291 aa	Known RBP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	NIPSNAP1	Q9BPW8	284 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	MRPS26	Q9BYN8	205 aa	Known RBP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	MRPL27	Q9P0M9	148 aa	Known RBP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	TTC21A	Q8NDW8	1320 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	MTUS2	Q5JR59	1369 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	WRN	Q14191	1432 aa	Predicted RBP eCLIP	0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	NEO1	Q92859	1461 aa		0.78	□□□□□ -2.28
SMC4-223	ENST00000493695	TGIF2-C20orf24	A0A0A6YYL0	155 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	TMEM212	A6NML5	194 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695		M0R036	132 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	HLA-DRB1	P01911	266 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	HTR1A	P08908	422 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	UBB	P0CG47	229 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	SPCS3	P61009	180 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	TMEM106A	Q96A25	262 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	SCGB3A1	Q96QR1	104 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	TSPAN32	Q96QS1	320 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	FBXL12	Q9NXK8	326 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	CKLF	Q9UBR5	152 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	HECW2	Q9P2P5	1572 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	ROS1	P08922	2347 aa		0.77	□□□□□ -2.29
SMC4-223	ENST00000493695	ZNF469	Q96JG9	3925 aa	Predicted RBP	0.76	□□□□□ -2.29
SMC4-223	ENST00000493695	DIDO1	Q9BTC0	2240 aa	Known RBP	0.76	□□□□□ -2.29
SMC4-223	ENST00000493695	MICAL3	Q7RTP6	2002 aa		0.76	□□□□□ -2.29
SMC4-223	ENST00000493695	TNRC6B	Q9UPQ9	1833 aa	Known RBP	0.76	□□□□□ -2.29
SMC4-223	ENST00000493695	CHP2	O43745	196 aa		0.76	□□□□□ -2.29
SMC4-223	ENST00000493695	NIPSNAP2	O75323	286 aa		0.76	□□□□□ -2.29
SMC4-223	ENST00000493695	IFNA16	P05015	189 aa		0.76	□□□□□ -2.29

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