RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 S100A7L2Q5SY68 101 aa11.03□□□□□ -0.64
COL6A3-212ENST00000491769 VMO1Q7Z5L0 202 aa11.03□□□□□ -0.64
COL6A3-212ENST00000491769 CST9LQ9H4G1 147 aa11.03□□□□□ -0.64
COL6A3-212ENST00000491769 TMEM50AO95807 157 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 GHRHP01286 108 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 SMIM10L1P0DMW3 83 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 TMEM187Q14656 261 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 SMIM10Q96HG1 83 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 TRGV11A0A075B6L2 103 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 C1orf100Q5SVJ3 147 aa11.02□□□□□ -0.64
COL6A3-212ENST00000491769 LOC102723996A0A087X1L8 192 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 LDLRAD4O15165 306 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 APOHP02749 345 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-212ENST00000491769 TFF1P04155 84 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 IRF3Q14653 427 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 FMC1Q96HJ9 113 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 WFIKKN1Q96NZ8 548 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 MRPS18AQ9NVS2 196 aaKnown RBP11.02□□□□□ -0.65
COL6A3-212ENST00000491769 PRSS23O95084 383 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 UMODP07911 640 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 GATA2P23769 480 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-212ENST00000491769 CMC4P56277 68 aaPredicted RBP11.02□□□□□ -0.65
COL6A3-212ENST00000491769 CKS1BP61024 79 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 AICDAQ9GZX7 198 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 IQCF6A8MYZ5 107 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 IGHV3-53P01767 116 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 SOD3P08294 240 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 CA7P43166 264 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 EFNA4P52798 201 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 FXYD7P58549 80 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 PAX8Q06710 450 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 BRD3OSQ6XYD6 125 aa11.02□□□□□ -0.65
COL6A3-212ENST00000491769 ZNFX1Q9P2E3 1918 aaKnown RBP11.01□□□□□ -0.65
COL6A3-212ENST00000491769 TRAV41A0A0B4J266 112 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 TRAV21A0A0B4J279 112 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 PLA2G10O15496 165 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 KLHL30-AS1Q8NEE0 82 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 IGHV3-73A0A0B4J1V6 119 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 A0A0U1RRA0 63 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 TIMM23O14925 209 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 HOXA3O43365 443 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-212ENST00000491769 SMIM13P0DJ93 91 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 TFF3Q07654 80 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 C20orf204Q6ZNR8 217 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 SMDT1Q9H4I9 107 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 SAA2-SAA4A0A096LPE2 208 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 SAA2P0DJI9 122 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-212ENST00000491769 C5orf66Q9H5L9 145 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 SVILO95425 2214 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 B4DSR2 109 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 APOMO95445 188 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 FHITP49789 147 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 ALX4Q9H161 411 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-212ENST00000491769 HLA-DQB1P01920 261 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 CD28P10747 220 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 GZMMP51124 257 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 OR1P1Q8NH06 330 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 SPRR3Q9UBC9 169 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 RNF114Q9Y508 228 aa11.01□□□□□ -0.65
COL6A3-212ENST00000491769 MYO16Q9Y6X6 1858 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 PRB4P10163 310 aaPredicted RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 SP5Q6BEB4 398 aaPredicted RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 WFDC6Q9BQY6 131 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 NPCDR1Q9BY65 106 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 LCNL1Q6ZST4 164 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 TRAF4Q9BUZ4 470 aaPredicted RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 GPX4P36969 197 aaPredicted RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 TRBV5-7A0A0A0MS05 114 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 EGR4Q05215 589 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 KLRD1Q13241 179 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 ZNF672Q499Z4 452 aaPredicted RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 SLC50A1Q9BRV3 221 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 TDRD15B5MCY1 1934 aaKnown RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 MIA3Q5JRA6 1907 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 LINC00158P58513 81 aa11□□□□□ -0.65
COL6A3-212ENST00000491769 IGLV3-21P80748 117 aaPredicted RBP11□□□□□ -0.65
COL6A3-212ENST00000491769 FAM90A1Q86YD7 464 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 GREM1O60565 184 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 SIGLEC15Q6ZMC9 328 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 IGHV1-18A0A0C4DH31 117 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 MDC1Q14676 2089 aaKnown RBP10.99□□□□□ -0.65
COL6A3-212ENST00000491769 TRGV1A0A0A0MS02 117 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-212ENST00000491769 SNAI2O43623 268 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 CD59P13987 128 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 PPIFP30405 207 aaKnown RBP10.99□□□□□ -0.65
COL6A3-212ENST00000491769 ZNF600Q6ZNG1 722 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 ADAMTSL1Q8N6G6 1762 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 CCDC88CQ9P219 2028 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 ZNF318Q5VUA4 2279 aa10.99□□□□□ -0.65
COL6A3-212ENST00000491769 A0A1B0GUT8 65 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 OR9G9P0C7N8 305 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 CXCL2P19875 107 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 MIR17HGQ75NE6 70 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 CTHRC1Q96CG8 243 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 RCHY1Q96PM5 261 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 H3BUX3 64 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 RND3P61587 244 aa10.98□□□□□ -0.65
COL6A3-212ENST00000491769 C8orf82Q6P1X6 216 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-212ENST00000491769 RPP21Q9H633 154 aaKnown RBP10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms