RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 ASPHD1Q5U4P2 390 aa10.9□□□□□ -0.66
C9orf3-221ENST00000489562 CTRB2Q6GPI1 263 aa10.9□□□□□ -0.66
C9orf3-221ENST00000489562 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.9□□□□□ -0.66
C9orf3-221ENST00000489562 LINC00527Q9UJ94 153 aa10.9□□□□□ -0.66
C9orf3-221ENST00000489562 RCL1Q9Y2P8 373 aaKnown RBP10.9□□□□□ -0.66
C9orf3-221ENST00000489562 LSM5Q9Y4Y9 91 aaKnown RBP10.9□□□□□ -0.66
C9orf3-221ENST00000489562 U3KQ87 197 aa10.9□□□□□ -0.66
C9orf3-221ENST00000489562 A0A1B0GVG6 124 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 L7N2F9 121 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 FBXO24O75426 580 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 IGHG4P01861 327 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 APELAP0DMC3 54 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 HIST1H1BP16401 226 aaKnown RBP10.89□□□□□ -0.67
C9orf3-221ENST00000489562 PPIFP30405 207 aaKnown RBP10.89□□□□□ -0.67
C9orf3-221ENST00000489562 VAMP2P63027 116 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 CFHR3Q02985 330 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 BSXQ3C1V8 233 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 CENPVQ7Z7K6 275 aaPredicted RBP10.89□□□□□ -0.67
C9orf3-221ENST00000489562 SLC24A4Q8NFF2 622 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 OR1P1Q8NH06 330 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 SMIM8Q96KF7 97 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 SLA2Q9H6Q3 261 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 RNF114Q9Y508 228 aa10.89□□□□□ -0.67
C9orf3-221ENST00000489562 F11RQ9Y624 299 aaKnown RBP10.89□□□□□ -0.67
C9orf3-221ENST00000489562 CORTO00230 105 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 TSC22D2O75157 780 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 DEDDO75618 318 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 MPC2O95563 127 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 IFNA10P01566 189 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 IGLV1-40P01703 118 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 REG1AP05451 166 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 ELANEP08246 267 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 IAPPP10997 89 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 DEFA4P12838 97 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 RPL23AP62750 156 aaKnown RBP10.88□□□□□ -0.67
C9orf3-221ENST00000489562 CD83Q01151 205 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 FOXE3Q13461 319 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 KLK9Q2XQG4 91 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 LRRC37A5PQ49AS3 106 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 C2orf83Q53S99 150 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 TEX38Q6PEX7 206 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 OR5T1Q8NG75 326 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 THYN1Q9P016 225 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 KLK9Q9UKQ9 250 aa10.88□□□□□ -0.67
C9orf3-221ENST00000489562 E5RGE8 158 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 CCNKO75909 580 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 SCAF4O95104 1147 aaKnown RBP10.87□□□□□ -0.67
C9orf3-221ENST00000489562 RNASE2P10153 161 aaKnown RBP10.87□□□□□ -0.67
C9orf3-221ENST00000489562 MDKP21741 143 aaPredicted RBP10.87□□□□□ -0.67
C9orf3-221ENST00000489562 NPY1RP25929 384 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 PROK1P58294 105 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 KRTAP24-1Q3LI83 254 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 PRSS54Q6PEW0 395 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 AKAP14Q86UN6 197 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 KLHDC1Q8N7A1 406 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 OR4X2Q8NGF9 303 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 OR2T35Q8NGX2 323 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 THAP6Q8TBB0 222 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 TMEM158Q8WZ71 300 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 TAF15Q92804 592 aaKnown RBP eCLIP10.87□□□□□ -0.67
C9orf3-221ENST00000489562 P2RX4Q99571 388 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 ZNF355PQ9NSJ1 428 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 PSENENQ9NZ42 101 aa10.87□□□□□ -0.67
C9orf3-221ENST00000489562 STRAPQ9Y3F4 350 aaKnown RBP10.87□□□□□ -0.67
C9orf3-221ENST00000489562 SOX15O60248 233 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 RAB11AP62491 216 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 SPANXN5Q5MJ07 72 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 PVRIGQ6DKI7 326 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 TMEM65Q6PI78 240 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 ZNF329Q86UD4 541 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 RNF152Q8N8N0 203 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 WIPF2Q8TF74 440 aaPredicted RBP10.86□□□□□ -0.67
C9orf3-221ENST00000489562 WDR89Q96FK6 387 aaPredicted RBP10.86□□□□□ -0.67
C9orf3-221ENST00000489562 C11orf1Q9H5F2 150 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 CUBNO60494 3623 aa10.86□□□□□ -0.67
C9orf3-221ENST00000489562 ATRQ13535 2644 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 IGLV11-55A0A075B6I3 123 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 TRBV9A0A0B4J1U6 114 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 FAM223BA6NKX1 122 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 TMEM50AO95807 157 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 PF4V1P10720 104 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 LYL1P12980 280 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 PSMB8P28062 276 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 P2RY1P47900 373 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 PAX9P55771 341 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 EXOSC2Q13868 293 aaKnown RBP10.85□□□□□ -0.67
C9orf3-221ENST00000489562 C11orf87Q6NUJ2 197 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 SLC25A24Q6NUK1 477 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 FAM223AQ8IWN6 122 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 NECAP1Q8NC96 275 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 OR5AU1Q8NGC0 362 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 RNASEH2CQ8TDP1 164 aaKnown RBP10.85□□□□□ -0.67
C9orf3-221ENST00000489562 C19orf24Q9BVV8 132 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 RANGRFQ9HD47 186 aaPredicted RBP10.85□□□□□ -0.67
C9orf3-221ENST00000489562 LYRM2Q9NU23 88 aaPredicted RBP10.85□□□□□ -0.67
C9orf3-221ENST00000489562 MBD2Q9UBB5 411 aa10.85□□□□□ -0.67
C9orf3-221ENST00000489562 TRAV14DV4A0A0A6YYC5 116 aa10.84□□□□□ -0.67
C9orf3-221ENST00000489562 A0A0G2JLM5 398 aa10.84□□□□□ -0.67
C9orf3-221ENST00000489562 C15orf62A8K5M9 175 aa10.84□□□□□ -0.67
C9orf3-221ENST00000489562 H0YIZ8 118 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms