RNA–Protein interactions for RNA: ENST00000489241.1

XRN1-213, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 393 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-213ENST00000489241 RPL22L1Q6P5R6 122 aaKnown RBP1.91□□□□□ -2.1
XRN1-213ENST00000489241 C12orf45Q8N5I9 185 aaPredicted RBP1.91□□□□□ -2.1
XRN1-213ENST00000489241 RPP25LQ8N5L8 163 aaKnown RBP1.91□□□□□ -2.1
XRN1-213ENST00000489241 Q8NDZ9 215 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 TTTY12Q9BZ98 90 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 C20orf27Q9GZN8 174 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 VCX3BQ9H321 246 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 FAM32AQ9Y421 112 aaKnown RBP1.91□□□□□ -2.1
XRN1-213ENST00000489241 ARL5AQ9Y689 179 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 SLX4Q8IY92 1834 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 ZNF532Q9HCE3 1301 aa1.91□□□□□ -2.1
XRN1-213ENST00000489241 TRAV9-1A0A075B6T8 112 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 IGHV1-18A0A0C4DH31 117 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 A0A1B0GVG6 124 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 IRGMA1A4Y4 181 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 ARRDC5A6NEK1 342 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 SIGLEC16A6NMB1 481 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 TRAPPC2LH3BP13 241 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 SERPINE1P05121 402 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 P0DMU3 169 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 FAM231AP0DMU4 169 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 FAM231CP0DMU5 169 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 ERHP84090 104 aaKnown RBP1.9□□□□□ -2.11
XRN1-213ENST00000489241 GLO1Q04760 184 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 DHRS4L2Q6PKH6 230 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 MCFD2Q8NI22 146 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 H1FXQ92522 213 aaKnown RBP1.9□□□□□ -2.11
XRN1-213ENST00000489241 CEP19Q96LK0 163 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 PHB2Q99623 299 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 C9orf16Q9BUW7 83 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 SAMHD1Q9Y3Z3 626 aaKnown RBP1.9□□□□□ -2.11
XRN1-213ENST00000489241 COL4A2P08572 1712 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 HECW1Q76N89 1606 aa1.9□□□□□ -2.11
XRN1-213ENST00000489241 NYNRINQ9P2P1 1898 aaKnown RBP1.9□□□□□ -2.11
XRN1-213ENST00000489241 NEO1Q92859 1461 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 hCG_1818297A0A087WSY0 165 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 A8MT66 165 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 H3BRN7 92 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 BUB1B-PAK6H3BSN5 160 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 J3QQQ9 107 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 OR2B3O76000 313 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 RBP1P09455 135 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 RPL26P61254 145 aaKnown RBP1.89□□□□□ -2.11
XRN1-213ENST00000489241 SUPT4H1P63272 117 aaKnown RBP1.89□□□□□ -2.11
XRN1-213ENST00000489241 MOGQ16653 247 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 FAM27BQ5VT28 67 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 Q6ZTI0 123 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 KRT222Q8N1A0 295 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 TXNDC17Q9BRA2 123 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 TIMM21Q9BVV7 248 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 CCDC90BQ9GZT6 254 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 CHST6Q9GZX3 395 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 ENY2Q9NPA8 101 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 ARMC1Q9NVT9 282 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 RPL26L1Q9UNX3 145 aaKnown RBP1.89□□□□□ -2.11
XRN1-213ENST00000489241 CYSLTR1Q9Y271 337 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 KDM5BQ9UGL1 1544 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 TTC21AQ8NDW8 1320 aa1.89□□□□□ -2.11
XRN1-213ENST00000489241 CACNA1GO43497 2377 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 CUL9Q8IWT3 2517 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 HIVEP2P31629 2446 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 A0A0D9SEW6 157 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 ZNF705FA8MVS1 300 aaPredicted RBP1.88□□□□□ -2.11
XRN1-213ENST00000489241 SLC22A1O15245 554 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 PGLYRP1O75594 196 aaPredicted RBP1.88□□□□□ -2.11
XRN1-213ENST00000489241 RPS4Y1P22090 263 aaKnown RBP1.88□□□□□ -2.11
XRN1-213ENST00000489241 G6PCP35575 357 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 MAGEA12P43365 314 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 TMEM258P61165 79 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 SPANXN3Q5MJ09 141 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 KTN1-AS1Q86SY8 53 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 KRTAP13-1Q8IUC0 172 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 RASSF5Q8WWW0 418 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 SLC7A6Q92536 515 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 OPTCQ9UBM4 332 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 STOML2Q9UJZ1 356 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 RTEL1-TNFRSF6BF6WH68 1400 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 SCN9AQ15858 1988 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 CAMSAP1Q5T5Y3 1602 aa1.88□□□□□ -2.11
XRN1-213ENST00000489241 ARHGAP32A7KAX9 2087 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 RTL1A6NKG5 1358 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 IGLV3-9A0A075B6K5 115 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 OR2J2O76002 312 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 IFNA10P01566 189 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 C8GP07360 202 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 ZNF80P51504 273 aaPredicted RBP1.87□□□□□ -2.11
XRN1-213ENST00000489241 DEFA3P59666 94 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 RALGAPA2Q2PPJ7 1873 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 LRRC28Q86X40 367 aaPredicted RBP1.87□□□□□ -2.11
XRN1-213ENST00000489241 TERB2Q8NHR7 220 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 SPACA4Q8TDM5 124 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 AP3S1Q92572 193 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 PXDNLA1KZ92 1463 aa1.87□□□□□ -2.11
XRN1-213ENST00000489241 MYO9BQ13459 2157 aa1.86□□□□□ -2.11
XRN1-213ENST00000489241 EIF3AQ14152 1382 aaKnown RBP1.86□□□□□ -2.11
XRN1-213ENST00000489241 TRBV10-2A0A0K0K1G8 114 aa1.86□□□□□ -2.11
XRN1-213ENST00000489241 HMSDA8MTL9 139 aa1.86□□□□□ -2.11
XRN1-213ENST00000489241 SULT1B1O43704 296 aa1.86□□□□□ -2.11
XRN1-213ENST00000489241 SMIM17P0DL12 118 aa1.86□□□□□ -2.11
XRN1-213ENST00000489241 PPIBP23284 216 aaKnown RBP1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms