RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 MRAP2Q96G30 205 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 ZNF414Q96IQ9 312 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 WFDC1Q9HC57 220 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 IGHV3-66A0A0C4DH42 116 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 GDF15Q99988 308 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 GEMIN7Q9H840 131 aaKnown RBP13.81□□□□□ -0.2
COL7A1-210ENST00000487017 TMPRSS3P57727 454 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 ID3Q02535 119 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 TEX45Q8NA69 505 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 OR52E5Q8NH55 327 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 RPP21Q9H633 154 aaKnown RBP13.81□□□□□ -0.2
COL7A1-210ENST00000487017 LOC102723996A0A087X1L8 192 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 IZUMO1RA6ND01 250 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 LINC00587B1AMM8 73 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 IGKV1D-8A0A087WSZ0 117 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 C9JCJ5 164 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 CELA3BP08861 270 aa13.81□□□□□ -0.2
COL7A1-210ENST00000487017 RNASEH2CQ8TDP1 164 aaKnown RBP13.81□□□□□ -0.2
COL7A1-210ENST00000487017 ZNF497Q6ZNH5 498 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 PRELID3AQ96N28 172 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 PEF1Q9UBV8 284 aaKnown RBP13.8□□□□□ -0.2
COL7A1-210ENST00000487017 IGHV3-49A0A0A0MS15 119 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 LHX2P50458 406 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 ATP5J2P56134 94 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 JOSD1Q15040 202 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-210ENST00000487017 C14orf144Q96I85 54 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 S4R3C0 116 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 ZNF883P0CG24 379 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 APOBEC3AP31941 199 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-210ENST00000487017 HIST1H1AQ02539 215 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-210ENST00000487017 DMRTA2Q96SC8 542 aa13.8□□□□□ -0.2
COL7A1-210ENST00000487017 CENPVQ7Z7K6 275 aaPredicted RBP13.8□□□□□ -0.2
COL7A1-210ENST00000487017 MRPL20Q9BYC9 149 aaKnown RBP13.8□□□□□ -0.2
COL7A1-210ENST00000487017 LDLRAD4O15165 306 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 MST1P26927 711 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 MEF2CQ06413 473 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-210ENST00000487017 FBXL15Q9H469 300 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 SMAD7O15105 426 aaKnown RBP13.79□□□□□ -0.2
COL7A1-210ENST00000487017 APOHP02749 345 aaPredicted RBP13.79□□□□□ -0.2
COL7A1-210ENST00000487017 SUMO2P61956 95 aaKnown RBP13.79□□□□□ -0.2
COL7A1-210ENST00000487017 FAM27E3Q08E93 113 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 A0A1B0GUT8 65 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 TTC32Q5I0X7 151 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 UBE2CO00762 179 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 SMIM13P0DJ93 91 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 TRAV24A0A0B4J272 114 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 TNFSF10P50591 281 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 TMEM144Q7Z5S9 345 aa13.79□□□□□ -0.2
COL7A1-210ENST00000487017 ASXL3Q9C0F0 2248 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 GATA2P23769 480 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-210ENST00000487017 YPEL1O60688 119 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 CD5P06127 495 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 ZNF324BQ6AW86 544 aaPredicted RBP13.78□□□□□ -0.2
COL7A1-210ENST00000487017 YPEL2Q96QA6 119 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 KIR2DL4Q99706 377 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 LINC00312Q9Y6C7 94 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 SCN8AQ9UQD0 1980 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 TET1Q8NFU7 2136 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 C1QTNF9BB2RNN3 333 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 LTBRP36941 435 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 CCL20P78556 96 aa13.78□□□□□ -0.2
COL7A1-210ENST00000487017 NPFFO15130 113 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 LHFPL1Q86WI0 220 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 TMEM160Q9NX00 188 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 FOXA2Q9Y261 457 aaPredicted RBP13.77□□□□□ -0.2
COL7A1-210ENST00000487017 A0A1B0GW15 77 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 SERF1AO75920 110 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 Q5PR19 223 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 ALPK2Q86TB3 2170 aa13.77□□□□□ -0.2
COL7A1-210ENST00000487017 SAA2-SAA4A0A096LPE2 208 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 MUC21A0A0G2JKD1 596 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 MUC21A0A140T8X8 626 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BKO60814 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 RAMP3O60896 148 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BJP06899 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 C1QTNF9P0C862 333 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 SAA2P0DJI9 122 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BOP23527 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BBP33778 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BDP58876 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BCP62807 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST2H2BEQ16778 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST2H2BFQ5QNW6 126 aaPredicted RBP13.77□□□□□ -0.21
COL7A1-210ENST00000487017 MUC21Q5SSG8 566 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 WDR82Q6UXN9 313 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BHQ93079 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BNQ99877 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 HIST1H2BMQ99879 126 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 C15orf61A6NNL5 157 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 TSPAN13O95857 204 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 PF4P02776 101 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 TSPOP30536 169 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 ADMP35318 185 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 CYTL1Q9NRR1 136 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 A0A1B0GV72 72 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 UPK2O00526 184 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 CD55P08174 381 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 CRYGSP22914 178 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 FAM19A2Q8N3H0 131 aa13.77□□□□□ -0.21
COL7A1-210ENST00000487017 C18orf15Q96N68 181 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 144.7 ms