RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 GINS4Q9BRT9 223 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 SLC50A1Q9BRV3 221 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 PLEKHJ1Q9NW61 149 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 ZFP30Q9Y2G7 519 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 USP24Q9UPU5 2620 aa0.33□□□□□ -2.36
VPS50-217ENST00000485140 LAMA4Q16363 1823 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 TRBV20OR9-2A0A075B6H5 130 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 FAM25EA8MYX2 175 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 OR2T1O43869 369 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 RPL12P30050 165 aaKnown RBP0.32□□□□□ -2.36
VPS50-217ENST00000485140 RAB4BP61018 213 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 COQ5Q5HYK3 327 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 SPANXN3Q5MJ09 141 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 CLVS2Q5SYC1 327 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 GDF5OSQ5U4N7 250 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 KRTAP19-3Q7Z4W3 81 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 IQCF2Q8IXL9 164 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 PIGXQ8TBF5 258 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 ATP6V1G3Q96LB4 118 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 ACER3Q9NUN7 267 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 C3orf18Q9UK00 162 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 ABCC11Q96J66 1382 aa0.32□□□□□ -2.36
VPS50-217ENST00000485140 TNRC6BQ9UPQ9 1833 aaKnown RBP0.31□□□□□ -2.36
VPS50-217ENST00000485140 DCCP43146 1447 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 A0A0D9SG52 128 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 OR1I1O60431 355 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 OCM2P0CE71 109 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 C8orf88P0DMB2 117 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 MAP2K4P45985 399 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 MARCKSL1P49006 195 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 MAP3K7CLP57077 242 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 UBE2G2P60604 165 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 OGFRL1Q5TC84 451 aaPredicted RBP0.31□□□□□ -2.36
VPS50-217ENST00000485140 C1orf195Q5TG92 126 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 AADACL3Q5VUY0 350 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 RPL22L1Q6P5R6 122 aaKnown RBP0.31□□□□□ -2.36
VPS50-217ENST00000485140 SPATA8Q6RVD6 105 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 LINC00311Q8N616 119 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 DEFB125Q8N687 156 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 OR4E2Q8NGC2 313 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 OR2T4Q8NH00 348 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 ZNF418Q8TF45 676 aaPredicted RBP0.31□□□□□ -2.36
VPS50-217ENST00000485140 OPTNQ96CV9 577 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 MIXL1Q9H2W2 232 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 FGFR1OP2Q9NVK5 253 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 STRCQ7RTU9 1775 aa0.31□□□□□ -2.36
VPS50-217ENST00000485140 RIC1Q4ADV7 1423 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 A0A0A6YYH2 397 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 A0A0J9YY10 115 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 A0A1B0GX78 115 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 A6NJ64 397 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 C19orf84I3L1E1 186 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 M0R2N4 97 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 CLPSP04118 112 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BOP23527 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 FKBP2P26885 142 aaKnown RBP0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BBP33778 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BDP58876 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BCP62807 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 SKP1P63208 163 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 PDE6HQ13956 83 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST2H2BEQ16778 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST2H2BFQ5QNW6 126 aaPredicted RBP0.3□□□□□ -2.36
VPS50-217ENST00000485140 LRRN1Q6UXK5 716 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 SBSPONQ8IVN8 264 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BHQ93079 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 AMELYQ99218 206 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BNQ99877 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 HIST1H2BMQ99879 126 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 DERL1Q9BUN8 251 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 ULBP3Q9BZM4 244 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 IMP3Q9NV31 184 aaKnown RBP0.3□□□□□ -2.36
VPS50-217ENST00000485140 RASL12Q9NYN1 266 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 EML5Q05BV3 1969 aa0.3□□□□□ -2.36
VPS50-217ENST00000485140 EML6Q6ZMW3 1958 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 A0A1W2PPM0 123 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 C2orf70A6NJV1 201 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 PHGR1C9JFL3 82 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 KCNK1O00180 336 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 SLC16A4O15374 487 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 BAALC-AS2P0C853 105 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 COX6A1P12074 109 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 SPI1P17947 270 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 BLVRAP53004 296 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 NAA20P61599 178 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 RHOGP84095 191 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 MLLT11Q13015 90 aaPredicted RBP0.29□□□□□ -2.36
VPS50-217ENST00000485140 GUK1Q16774 197 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 KRTAP21-1Q3LI58 79 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 KHDC3LQ587J8 217 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 Q6ZQT0 140 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 Q6ZS49 121 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 BPIFA4PQ86YQ2 179 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 PFN4Q8NHR9 129 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 C4orf3Q8WVX3 66 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 PATE1Q8WXA2 126 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 TMEM147Q9BVK8 224 aa0.29□□□□□ -2.36
VPS50-217ENST00000485140 UPF3BQ9BZI7 483 aaKnown RBP0.29□□□□□ -2.36
VPS50-217ENST00000485140 WDR61Q9GZS3 305 aaKnown RBP0.29□□□□□ -2.36
VPS50-217ENST00000485140 DRC3Q9H069 523 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms