RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 LINC00470Q9BZP3 86 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 HCFC1P51610 2035 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 MUC21A0A0G2JKD1 596 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 MUC21A0A140T8X8 626 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 CELA3BP08861 270 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 NPY1RP25929 384 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 MUC21Q5SSG8 566 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 SMRP1Q8NCR6 262 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 HES4Q9HCC6 221 aa15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 LSM4Q9Y4Z0 139 aaKnown RBP15.49■□□□□ 0.07
CCDC88B-207ENST00000479965 IZUMO1RA6ND01 250 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 H0YJW9 148 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 MYOD1P15172 320 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 DUTP33316 252 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 CYB561P49447 251 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 TRAT1Q6PIZ9 186 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 NABP2Q9BQ15 211 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 TNFRSF19Q9NS68 423 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 TMEM140Q9NV12 185 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 PRSS46E5RG02 174 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 LRRC10Q5BKY1 277 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 NUDT10Q8NFP7 164 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 CACNA1EQ15878 2313 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 SMIM27A0A1W2PRY6 76 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 PPBPP02775 128 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 CD24P25063 80 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 ENY2Q9NPA8 101 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 TMEM167BQ9NRX6 74 aa15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 MRPL27Q9P0M9 148 aaKnown RBP15.48■□□□□ 0.07
CCDC88B-207ENST00000479965 TAX1BP3O14907 124 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 PROP1O75360 226 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 FOXA3P55318 350 aaPredicted RBP15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 OR8B3Q8NGG8 313 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 OR52E5Q8NH55 327 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 Q0VFX4 171 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 ZNF841Q6ZN19 808 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 TRIB1Q96RU8 372 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 TMEM70Q9BUB7 260 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 HES7Q9BYE0 225 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 SAP30LQ9HAJ7 183 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 PI4KAP42356 2102 aa15.47■□□□□ 0.07
CCDC88B-207ENST00000479965 GDF5OSQ5U4N7 250 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 SLC35E4Q6ICL7 350 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 IGKV3D-15A0A087WSY6 115 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 C2orf70A6NJV1 201 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 SPINT2O43291 252 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 FAM214BQ7L5A3 538 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 LOXL2Q9Y4K0 774 aa15.46■□□□□ 0.07
CCDC88B-207ENST00000479965 IGLV2-8P01709 118 aa15.46■□□□□ 0.06
CCDC88B-207ENST00000479965 TBR1Q16650 682 aa15.46■□□□□ 0.06
CCDC88B-207ENST00000479965 SGK494Q96LW2 274 aa15.46■□□□□ 0.06
CCDC88B-207ENST00000479965 S1PR3Q99500 378 aa15.46■□□□□ 0.06
CCDC88B-207ENST00000479965 ZPBPQ9BS86 351 aa15.46■□□□□ 0.06
CCDC88B-207ENST00000479965 ARG2P78540 354 aa15.45■□□□□ 0.06
CCDC88B-207ENST00000479965 LINC00173Q6ZV60 143 aa15.45■□□□□ 0.06
CCDC88B-207ENST00000479965 RIPPLY3P57055 190 aa15.45■□□□□ 0.06
CCDC88B-207ENST00000479965 WDR31Q8NA23 367 aa15.45■□□□□ 0.06
CCDC88B-207ENST00000479965 SLC25A40Q8TBP6 338 aa15.45■□□□□ 0.06
CCDC88B-207ENST00000479965 LY6G6EA0A0G2JKS1 128 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 TOX4O94842 621 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 TMPRSS3P57727 454 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 TBC1D28Q2M2D7 210 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 NUP35Q8NFH5 326 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 LEAP2Q969E1 77 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 FZR1Q9UM11 496 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 U3KQA8 63 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 DMDP11532 3685 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 PRR14LQ5THK1 2151 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 PPOXP50336 477 aa15.44■□□□□ 0.06
CCDC88B-207ENST00000479965 MAGEA5P43359 124 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 BVES-AS1Q5T3Y7 98 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 ZNF503Q96F45 646 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 PMCHL2Q9BQD1 86 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 BOKQ9UMX3 212 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 GAGE12BA1L429 117 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 CORTO00230 105 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 SNAI2O43623 268 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 SLC25A34Q6PIV7 304 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 DUSP23Q9BVJ7 150 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 DUSP13Q9UII6 198 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 HSBP1L1C9JCN9 74 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 PRR20EP86478 221 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 PRR20CP86479 221 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 PRR20DP86480 221 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 PRR20BP86481 221 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 PRR20AP86496 221 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 IL11RAQ14626 422 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 MLANAQ16655 118 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 CORO2AQ92828 525 aa15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 TET2Q6N021 2002 aaPredicted RBP15.43■□□□□ 0.06
CCDC88B-207ENST00000479965 A0A087X0K7 114 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 TRAV5A0A0B4J249 113 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 HIGD1CA8MV81 97 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 PLGLB1Q02325 96 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 SNRNP40Q96DI7 357 aaKnown RBP15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 CSTL1Q9H114 145 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 TNCP24821 2201 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 RHOGP84095 191 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 PSG9Q00887 426 aa15.42■□□□□ 0.06
CCDC88B-207ENST00000479965 LYSMD4Q5XG99 296 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms