RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 OR4C46A6NHA9 309 aa2.1□□□□□ -2.07
VPS50-212ENST00000476413 GPX1P07203 203 aa2.1□□□□□ -2.07
VPS50-212ENST00000476413 C11orf68Q9H3H3 251 aaKnown RBP2.1□□□□□ -2.07
VPS50-212ENST00000476413 C8orf4Q9NR00 106 aa2.1□□□□□ -2.07
VPS50-212ENST00000476413 PRTFDC1Q9NRG1 225 aa2.1□□□□□ -2.07
VPS50-212ENST00000476413 STRCQ7RTU9 1775 aa2.1□□□□□ -2.07
VPS50-212ENST00000476413 TRAV26-2A0A0B4J265 109 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 FAM236DA0A1B0GTK5 79 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 MEIS3P1A6NDR6 274 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 SIGLEC16A6NMB1 481 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 CNIH1O95406 144 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 CTXN2P0C2S0 81 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 ZNF705BP0CI00 300 aaPredicted RBP2.09□□□□□ -2.07
VPS50-212ENST00000476413 FAM236CP0DP71 79 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BOP23527 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BBP33778 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BDP58876 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 DEFA1P59665 94 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BCP62807 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HBA1P69905 142 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 CCL7P80098 99 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST2H2BEQ16778 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.09□□□□□ -2.07
VPS50-212ENST00000476413 ANKRD29Q8N6D5 301 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BHQ93079 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 DCUN1D1Q96GG9 259 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BNQ99877 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 HIST1H2BMQ99879 126 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 SLC22A13Q9Y226 551 aa2.09□□□□□ -2.07
VPS50-212ENST00000476413 NUP155O75694 1391 aa2.09□□□□□ -2.08
VPS50-212ENST00000476413 IRGMA1A4Y4 181 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 IBA57-AS1B1ANH7 110 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 SLC22A1O15245 554 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 CLPSP04118 112 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 TRGC1P0CF51 173 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 ZNF80P51504 273 aaPredicted RBP2.08□□□□□ -2.08
VPS50-212ENST00000476413 ERVS71-1P61550 626 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 SRSF6Q13247 344 aaKnown RBP2.08□□□□□ -2.08
VPS50-212ENST00000476413 MOGQ16653 247 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 DCSTAMPQ9H295 470 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 DOK5Q9P104 306 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 ROBO3Q96MS0 1386 aa2.08□□□□□ -2.08
VPS50-212ENST00000476413 TMEM114B3SHH9 223 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 GPX2P18283 190 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 RPS4Y1P22090 263 aaKnown RBP2.07□□□□□ -2.08
VPS50-212ENST00000476413 FXYD2P54710 66 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 FADDQ13158 208 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 SPOPLQ6IQ16 392 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 RPL22L1Q6P5R6 122 aaKnown RBP2.07□□□□□ -2.08
VPS50-212ENST00000476413 C7orf65Q6ZTY9 151 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 TMEM86AQ8N2M4 240 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 OR13C4Q8NGS5 318 aa2.07□□□□□ -2.08
VPS50-212ENST00000476413 FAM173BQ6P4H8 233 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 ZNF563Q8TA94 476 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 RASSF5Q8WWW0 418 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 ITFG2Q969R8 447 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 Q96M85 177 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 TMEM147Q9BVK8 224 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 ULBP3Q9BZM4 244 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 BAIAP2Q9UQB8 552 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 PRELID3BQ9Y3B1 194 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 LHFPL6Q9Y693 200 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 TMEM56-RWDD3S4R434 201 aa2.06□□□□□ -2.08
VPS50-212ENST00000476413 TRGV2A0A075B6R0 118 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 EXOC1LA0A1B0GW35 172 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 ORC5O43913 435 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 FADS1O60427 444 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 HAND1O96004 215 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 G6PCP35575 357 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 EDDM3AQ14507 147 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 Q1T7F1 81 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 ARHGAP11BQ3KRB8 267 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 ZNF439Q8NDP4 499 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 H1FXQ92522 213 aaKnown RBP2.05□□□□□ -2.08
VPS50-212ENST00000476413 TOMM6Q96B49 74 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 COMMD5Q9GZQ3 224 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 CCDC144AA2RUR9 1427 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 GLI3P10071 1580 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 PCDH15Q96QU1 1955 aa2.05□□□□□ -2.08
VPS50-212ENST00000476413 DPRXA6NFQ7 191 aa2.04□□□□□ -2.08
VPS50-212ENST00000476413 NFYAP23511 347 aaPredicted RBP2.04□□□□□ -2.08
VPS50-212ENST00000476413 AP3S2P59780 193 aa2.04□□□□□ -2.08
VPS50-212ENST00000476413 IAH1Q2TAA2 248 aaPredicted RBP2.04□□□□□ -2.08
VPS50-212ENST00000476413 DHFR2Q86XF0 187 aa2.04□□□□□ -2.08
VPS50-212ENST00000476413 C12orf45Q8N5I9 185 aaPredicted RBP2.04□□□□□ -2.08
VPS50-212ENST00000476413 OR8B3Q8NGG8 313 aa2.04□□□□□ -2.08
VPS50-212ENST00000476413 PFN4Q8NHR9 129 aa2.04□□□□□ -2.08
VPS50-212ENST00000476413 C20orf27Q9GZN8 174 aa2.04□□□□□ -2.08
VPS50-212ENST00000476413 ZNF106Q9H2Y7 1883 aaKnown RBP2.03□□□□□ -2.08
VPS50-212ENST00000476413 BUB1B-PAK6H3BSN5 160 aa2.03□□□□□ -2.08
VPS50-212ENST00000476413 EIF2B2P49770 351 aaKnown RBP2.03□□□□□ -2.08
VPS50-212ENST00000476413 TERB2Q8NHR7 220 aa2.03□□□□□ -2.08
VPS50-212ENST00000476413 C11orf40Q8WZ69 217 aa2.03□□□□□ -2.08
VPS50-212ENST00000476413 RNASE7Q9H1E1 156 aaKnown RBP2.03□□□□□ -2.08
VPS50-212ENST00000476413 IDI2-AS1Q9NZ38 188 aa2.03□□□□□ -2.08
VPS50-212ENST00000476413 GLTPQ9NZD2 209 aa2.03□□□□□ -2.08
VPS50-212ENST00000476413 RTTNQ86VV8 2226 aa2.02□□□□□ -2.09
VPS50-212ENST00000476413 NEO1Q92859 1461 aa2.02□□□□□ -2.09
VPS50-212ENST00000476413 PIK3C2GO75747 1445 aa2.02□□□□□ -2.09
VPS50-212ENST00000476413 TONSLQ96HA7 1378 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms