RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 FOXJ2Q9P0K8 574 aa11.28□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 FBXL7Q9UJT9 491 aa11.28□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 CD7P09564 240 aa11.28□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 PILRBQ9UKJ0 227 aa11.28□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 B9A039 149 aa11.28□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 H0Y980 276 aa11.28□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 TRPM7Q96QT4 1865 aa11.27□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 LEMD1Q68G75 181 aa11.27□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 CD300LDQ6UXZ3 194 aa11.27□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 PKIAP61925 76 aa11.27□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 OSR1Q8TAX0 266 aaPredicted RBP11.27□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 PATJQ8NI35 1801 aa11.27□□□□□ -0.6
NPHP3-ACAD11-201ENST00000471702 SCN4AP35499 1836 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 C8orf88P0DMB2 117 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 DMRTA1Q5VZB9 504 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 SRXN1Q9BYN0 137 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 Q5PR19 223 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TAF15Q92804 592 aaKnown RBP eCLIP11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 VCX2Q9H322 139 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PTP4A3O75365 173 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ERVK11-1P61568 191 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PRADC1Q9BSG0 188 aa11.27□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 A0A0G2JLM5 398 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PGLYRP1O75594 196 aaPredicted RBP11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 COLCA1Q6ZS62 124 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 WDR34Q96EX3 536 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 GP6Q9HCN6 339 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 SPCS1Q9Y6A9 102 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PTPRFP10586 1907 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 AGRNO00468 2067 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 C22orf46C9J442 243 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 RARRES2Q99969 163 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 DDA1Q9BW61 102 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 IGHV3-64A0A075B6Q5 118 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PRB1P04280 392 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZNF385CQ66K41 422 aaPredicted RBP11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PARD6GQ9BYG4 376 aaPredicted RBP11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 HS3ST3B1Q9Y662 390 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 FOLR2P14207 255 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 P2RY4P51582 365 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZCCHC24Q8N2G6 241 aaKnown RBP11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TNFRSF9Q07011 255 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 WDFY2Q96P53 400 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 CHKB-CPT1BH3BT56 60 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 HLA-DRB1P01911 266 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 HSPE1P61604 102 aaKnown RBP11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 GPR146Q96CH1 333 aa11.26□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TRAV41A0A0B4J266 112 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 HMGA2P52926 109 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 RTN4RL2Q86UN3 420 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZNF107Q9UII5 783 aaPredicted RBP11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PAX4O43316 350 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TMEM45BQ96B21 275 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 LINC00527Q9UJ94 153 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PPP1R27Q86WC6 154 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 OR13A1Q8NGR1 328 aa11.25□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 CTSBP07858 339 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 NPC2P61916 151 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 C4orf48Q5BLP8 95 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 SLC25A28Q96A46 364 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 GGTLC1Q9BX51 225 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TNRC6CQ9HCJ0 1690 aaKnown RBP11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 CA1P00915 261 aaPredicted RBP11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 RPL35AP18077 110 aaKnown RBP11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 C1orf53Q5VUE5 145 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 A0A1B0GWB2 263 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 NABP2Q9BQ15 211 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 LGALS1P09382 135 aaKnown RBP11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ST6GALNAC6Q969X2 333 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 SIGLEC12Q96PQ1 595 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 CTDSPLO15194 276 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TIAF1O95411 115 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 C1QCP02747 245 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 BHLHA9Q7RTU4 235 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 PPP1R32Q7Z5V6 425 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 THAP8Q8NA92 274 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZNF414Q96IQ9 312 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 AGAP20933 346 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZNF703Q9H7S9 590 aaPredicted RBP11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 CRIM1Q9NZV1 1036 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TCF19Q9Y242 345 aa11.24□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 OR11H12B2RN74 326 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 HBDP02042 147 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 OR11H1Q8NG94 326 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 OR11H2Q8NH07 326 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TMEM167AQ8TBQ9 72 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 GPR132Q9UNW8 380 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 MSGN1A6NI15 193 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 C5orf47Q569G3 176 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 CENPWQ5EE01 88 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TGIF2-C20orf24A0A0A6YYL0 155 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 IFNL4K9M1U5 179 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ARAP2Q8WZ64 1704 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ARPC1AQ92747 370 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TMEM186Q96B77 213 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZNF625Q96I27 306 aaPredicted RBP11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 ZMAT4Q9H898 229 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 hADV29S1A0JD25 119 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 LYNX1G3V0Z9 82 aa11.23□□□□□ -0.61
NPHP3-ACAD11-201ENST00000471702 TCRAP04437 139 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms