RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 HINT2Q9BX68 163 aa9.99□□□□□ -0.81
COL28A1-206ENST00000465339 TRBV7-1A0A0A6YYK4 115 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 TEX13DA0A0J9YY54 714 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-206ENST00000465339 UCP1P25874 307 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 HSPE1P61604 102 aaKnown RBP9.98□□□□□ -0.81
COL28A1-206ENST00000465339 DHODHQ02127 395 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 WT1-ASQ06250 92 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 TRIM16LQ309B1 348 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 SP6Q3SY56 376 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 C19orf35Q6ZS72 473 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 TOMM5Q8N4H5 51 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 OR9G4Q8NGQ1 327 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 OR6Q1Q8NGQ2 317 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 OR1L6Q8NGR2 347 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 TMEM222Q9H0R3 208 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 C5orf66Q9H5L9 145 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 MCUBQ9NWR8 336 aa9.98□□□□□ -0.81
COL28A1-206ENST00000465339 ZNF256Q9Y2P7 627 aaPredicted RBP9.98□□□□□ -0.81
COL28A1-206ENST00000465339 BMPR1BO00238 502 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 GGCTO75223 188 aaKnown RBP9.97□□□□□ -0.81
COL28A1-206ENST00000465339 CDS2O95674 445 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 MECP2P51608 486 aaKnown RBP9.97□□□□□ -0.81
COL28A1-206ENST00000465339 AKR1C2P52895 323 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 SYNJ2BPP57105 145 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 KLF9Q13886 244 aaPredicted RBP9.97□□□□□ -0.81
COL28A1-206ENST00000465339 ZNF79Q15937 498 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 C21orf62-AS1Q17RA5 79 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 VN1R17PQ8TDU5 208 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 GLYATL2Q8WU03 294 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 TRIM63Q969Q1 353 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 RRNAD1Q96FB5 475 aaKnown RBP9.97□□□□□ -0.81
COL28A1-206ENST00000465339 NAA60Q9H7X0 242 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 PEMTQ9UBM1 199 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 KCNIP3Q9Y2W7 256 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 DMRT1Q9Y5R6 373 aa9.97□□□□□ -0.81
COL28A1-206ENST00000465339 PRKDCP78527 4128 aaKnown RBP9.96□□□□□ -0.81
COL28A1-206ENST00000465339 CRYM-AS1A6NIL9 109 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 DBX1A6NMT0 343 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 IGKV1-5P01602 117 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 P0C879 139 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 PRCDQ00LT1 54 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 SLC25A24Q6NUK1 477 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 CLEC19AQ6UXS0 136 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 FAM219AQ8IW50 185 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 SGPP2Q8IWX5 399 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 SIGLEC8Q9NYZ4 499 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 F11RQ9Y624 299 aaKnown RBP9.96□□□□□ -0.82
COL28A1-206ENST00000465339 DNAH3Q8TD57 4116 aa9.96□□□□□ -0.82
COL28A1-206ENST00000465339 A0A0B4J293 547 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 PPP5D1E7EU14 171 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 EIF4EBP3O60516 100 aaPredicted RBP9.95□□□□□ -0.82
COL28A1-206ENST00000465339 IGLV1-51P01701 117 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 IGHV3-23P01764 117 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 OR5AC1P0C628 307 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 ARL3P36405 182 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 ERHP84090 104 aaKnown RBP9.95□□□□□ -0.82
COL28A1-206ENST00000465339 IL34Q6ZMJ4 242 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 GPHB5Q86YW7 130 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 OR1P1Q8NH06 330 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 RNASE11Q8TAA1 199 aaKnown RBP9.95□□□□□ -0.82
COL28A1-206ENST00000465339 RBPMSQ93062 196 aaKnown RBP9.95□□□□□ -0.82
COL28A1-206ENST00000465339 CCDC140Q96MF4 163 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 ATP6V0BQ99437 205 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 PDCD10Q9BUL8 212 aa9.95□□□□□ -0.82
COL28A1-206ENST00000465339 MFSD2BA6NFX1 497 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 LGALS9O00182 355 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 OR2C1O95371 312 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 LY86O95711 162 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 CLEC3BP05452 202 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 CSN3P07498 182 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 SPNP16150 400 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 IZUMO4Q1ZYL8 232 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 FAM106AQ4KMX7 169 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 SELENOHQ8IZQ5 122 aaKnown RBP9.94□□□□□ -0.82
COL28A1-206ENST00000465339 OR2C3Q8N628 320 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 ZNF502Q8TBZ5 544 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 GALNT14Q96FL9 552 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 PRR25Q96S07 402 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 SLC25A21Q9BQT8 299 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-206ENST00000465339 SRRQ9GZT4 340 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 PLEKHA3Q9HB20 300 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 LSM4Q9Y4Z0 139 aaKnown RBP9.94□□□□□ -0.82
COL28A1-206ENST00000465339 S4R3C0 116 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 TMEM56-RWDD3S4R434 201 aa9.94□□□□□ -0.82
COL28A1-206ENST00000465339 PIGBOS1A0A0B4J2F0 54 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 INS-IGF2F8WCM5 200 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 IFNA17P01571 189 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 HLA-AP01891 365 aaKnown RBP9.93□□□□□ -0.82
COL28A1-206ENST00000465339 AKR1C4P17516 323 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 INPP1P49441 399 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 MFAP2P55001 183 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 ZNF57Q68EA5 555 aaPredicted RBP9.93□□□□□ -0.82
COL28A1-206ENST00000465339 SLC35G3Q8N808 338 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 ZNF114Q8NC26 417 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 IL22RA2Q969J5 263 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 TMEM230Q96A57 120 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.93□□□□□ -0.82
COL28A1-206ENST00000465339 CACFD1Q9UGQ2 172 aa9.93□□□□□ -0.82
COL28A1-206ENST00000465339 ST8SIA3O43173 380 aa9.92□□□□□ -0.82
COL28A1-206ENST00000465339 ANXA3P12429 323 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms