RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 SEPSECSQ9HD40 501 aaKnown RBP12.25□□□□□ -0.45
LDLR-202ENST00000455727 SPTBN2O15020 2390 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 IGHV1-69-2A0A0G2JMI3 117 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 NDUFB4O95168 129 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 MT-CO2P00403 227 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 GCHFRP30047 84 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 FBXL19-AS1Q494R0 122 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 LINC01551Q86U37 167 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 OR9G1Q8NH87 305 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 FRZBQ92765 325 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 SLC35E1Q96K37 410 aa12.24□□□□□ -0.45
LDLR-202ENST00000455727 ELOA3CA0A087WX78 387 aaPredicted RBP12.23□□□□□ -0.45
LDLR-202ENST00000455727 TRGC1P0CF51 173 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 SRP14P37108 136 aaKnown RBP12.23□□□□□ -0.45
LDLR-202ENST00000455727 PNKDQ8N490 385 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 CACNG8Q8WXS5 425 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 C19orf24Q9BVV8 132 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 ARL2-SNX15V9GYD0 113 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 PTPRQQ9UMZ3 2332 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 TRBV23-1A0A0A0MS06 115 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.23□□□□□ -0.45
LDLR-202ENST00000455727 FSTL3O95633 263 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 CASP6P55212 293 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 ERHP84090 104 aaKnown RBP12.23□□□□□ -0.45
LDLR-202ENST00000455727 WASHC3Q9Y3C0 194 aa12.23□□□□□ -0.45
LDLR-202ENST00000455727 A0A1W2PN81 502 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 MC5RP33032 325 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 CHRNA7P36544 502 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 GPX4P36969 197 aaPredicted RBP12.22□□□□□ -0.45
LDLR-202ENST00000455727 CD69Q07108 199 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 GAMTQ14353 236 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 CHODLQ9H9P2 273 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 MIOXQ9UGB7 285 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 PKDREJQ9NTG1 2253 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 DCHS1Q96JQ0 3298 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 PPP1R2P9O14990 202 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 GGCTO75223 188 aaKnown RBP12.22□□□□□ -0.45
LDLR-202ENST00000455727 IGHV1-8P0DP01 117 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 CHRNB4P30926 498 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 REG1BP48304 166 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 UCNP55089 124 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 IMMP2LQ96T52 175 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 FUT9Q9Y231 359 aa12.22□□□□□ -0.45
LDLR-202ENST00000455727 IGKV1OR2-108A0A075B7D4 117 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 IFITM10A6NMD0 228 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 DLL1O00548 723 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 AREGP15514 252 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 CA7P43166 264 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 SPATA31B1PQ5VZV4 182 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 C11orf42Q8N5U0 333 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 OR10W1Q8NGF6 305 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 TNFRSF14Q92956 283 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 ADGRG4Q8IZF6 3080 aa12.21□□□□□ -0.45
LDLR-202ENST00000455727 PPP5D1E7EU14 171 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 IGLV2-23P01705 113 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 HLA-DRB5Q30154 266 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 FAM78BQ5VT40 261 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 TGIF2LXQ8IUE1 241 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 NECAP1Q8NC96 275 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 OR2T10Q8NGZ9 312 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 C11orf52Q96A22 123 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 DERL1Q9BUN8 251 aa12.21□□□□□ -0.46
LDLR-202ENST00000455727 GAR1Q9NY12 217 aaKnown RBP12.21□□□□□ -0.46
LDLR-202ENST00000455727 YTHDF2Q9Y5A9 579 aaKnown RBP12.21□□□□□ -0.46
LDLR-202ENST00000455727 TYMSP04818 313 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 IL3RAP26951 378 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 FAM3BP58499 235 aaPredicted RBP12.2□□□□□ -0.46
LDLR-202ENST00000455727 DIAPH2-AS1Q14236 149 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 KCNIP4Q6PIL6 250 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 OR4P4Q8NGL7 312 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 OR4X1Q8NH49 305 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 BTF3L4Q96K17 158 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 TMEM133Q9H2Q1 129 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 TMEM167BQ9NRX6 74 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 SMG1Q96Q15 3661 aaKnown RBP12.2□□□□□ -0.46
LDLR-202ENST00000455727 TLN1Q9Y490 2541 aaKnown RBP12.2□□□□□ -0.46
LDLR-202ENST00000455727 FOXH1O75593 365 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 S100A2P29034 98 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 OR10J1P30954 320 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 LGALS7P47929 136 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 LCN2P80188 198 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 MOB3BQ86TA1 216 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 RNASEH2CQ8TDP1 164 aaKnown RBP12.2□□□□□ -0.46
LDLR-202ENST00000455727 ELOVL1Q9BW60 279 aa12.2□□□□□ -0.46
LDLR-202ENST00000455727 RALYQ9UKM9 306 aaKnown RBP12.2□□□□□ -0.46
LDLR-202ENST00000455727 CEP295Q9C0D2 2601 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 TRBV20OR9-2A0A075B6H5 130 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 SCO2A0A1W2PP80 73 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 MIR17HGQ75NE6 70 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 HIST3H2BBQ8N257 126 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 UHRF2Q96PU4 802 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 TECRQ9NZ01 308 aaKnown RBP12.19□□□□□ -0.46
LDLR-202ENST00000455727 PITPNC1Q9UKF7 332 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 CGB1A6NKQ9 187 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 E7EUB6 86 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 PLAUP00749 431 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 OR5G3P0C626 314 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 SUB1P53999 127 aaKnown RBP eCLIP12.19□□□□□ -0.469e-7■■■□□ 17.7
LDLR-202ENST00000455727 FOXL1Q12952 345 aa12.19□□□□□ -0.46
LDLR-202ENST00000455727 VMA21Q3ZAQ7 101 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms