RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 NEURL2Q9BR09 285 aa16.02■□□□□ 0.16
HMGB3-205ENST00000455596 COPZ2Q9P299 210 aa16.02■□□□□ 0.16
HMGB3-205ENST00000455596 RABL2AQ9UBK7 228 aaPredicted RBP16.02■□□□□ 0.16
HMGB3-205ENST00000455596 RABL2BQ9UNT1 228 aa16.02■□□□□ 0.16
HMGB3-205ENST00000455596 C3orf85A0A1B0GTC6 90 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 OR2T8A6NH00 312 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 IL18Q14116 193 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 GUCA2BQ16661 112 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 ZNF57Q68EA5 555 aaPredicted RBP16.01■□□□□ 0.15
HMGB3-205ENST00000455596 UNQ9165/PRO28630Q6UXU0 137 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 UXS1Q8NBZ7 420 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 SCARB1Q8WTV0 552 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 SMIM4Q8WVI0 70 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 WDR89Q96FK6 387 aaPredicted RBP16.01■□□□□ 0.15
HMGB3-205ENST00000455596 BSCL2Q96G97 398 aaPredicted RBP16.01■□□□□ 0.15
HMGB3-205ENST00000455596 ATP6V0BQ99437 205 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 ZNF436Q9C0F3 470 aaPredicted RBP16.01■□□□□ 0.15
HMGB3-205ENST00000455596 C21orf62Q9NYP8 219 aa16.01■□□□□ 0.15
HMGB3-205ENST00000455596 IGHV3-21A0A0B4J1V1 117 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 IGHV3-35A0A0C4DH35 117 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 CTDSPLO15194 276 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 ATG12O94817 140 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 ELLP55199 621 aaPredicted RBP16■□□□□ 0.15
HMGB3-205ENST00000455596 PRCDQ00LT1 54 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 MEF2DQ14814 521 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 TM4SF20Q53R12 229 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 SPSB3Q6PJ21 355 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 OR2C3Q8N628 320 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 OR13C8Q8NGS7 320 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 OR1P1Q8NH06 330 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 MARCH1Q8TCQ1 289 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 MARC2Q969Z3 335 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 PLEKHA3Q9HB20 300 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 MLXQ9UH92 298 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 UFC1Q9Y3C8 167 aa16■□□□□ 0.15
HMGB3-205ENST00000455596 CD7P09564 240 aa15.99■□□□□ 0.15
HMGB3-205ENST00000455596 AKR1C2P52895 323 aa15.99■□□□□ 0.15
HMGB3-205ENST00000455596 HSPE1P61604 102 aaKnown RBP15.99■□□□□ 0.15
HMGB3-205ENST00000455596 C6orf62Q9GZU0 229 aaPredicted RBP15.99■□□□□ 0.15
HMGB3-205ENST00000455596 MRPL27Q9P0M9 148 aaKnown RBP15.99■□□□□ 0.15
HMGB3-205ENST00000455596 DISC1C4P0D8 188 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 H3BMQ9 156 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 K7EIM0 57 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 IGKV1-5P01602 117 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 CTSDP07339 412 aaPredicted RBP15.98■□□□□ 0.15
HMGB3-205ENST00000455596 HAGHQ16775 308 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 TRIM16LQ309B1 348 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 Q56UQ5 140 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 FAAP20Q6NZ36 180 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 TMEM61Q8N0U2 210 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 UBAC2Q8NBM4 344 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 ZNF114Q8NC26 417 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 SELENOKQ9Y6D0 94 aa15.98■□□□□ 0.15
HMGB3-205ENST00000455596 C3orf84H3BNL1 204 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 B3GALNT1O75752 331 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 AKAIN1P0CW23 69 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 C8orf88P0DMB2 117 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 ERHP84090 104 aaKnown RBP15.97■□□□□ 0.15
HMGB3-205ENST00000455596 IZUMO4Q1ZYL8 232 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 SP6Q3SY56 376 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 BTNL8Q6UX41 500 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 TMEM190Q8WZ59 177 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 ISOC1Q96CN7 298 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 MISP3Q96FF7 219 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 SPATA25Q9BR10 227 aa15.97■□□□□ 0.15
HMGB3-205ENST00000455596 GAR1Q9NY12 217 aaKnown RBP15.97■□□□□ 0.15
HMGB3-205ENST00000455596 C14orf166Q9Y224 244 aaKnown RBP15.97■□□□□ 0.15
HMGB3-205ENST00000455596 F8W735 103 aaPredicted RBP15.96■□□□□ 0.15
HMGB3-205ENST00000455596 NDUFA4O00483 81 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 P0C879 139 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 UCP1P25874 307 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 SLC16A13Q7RTY0 426 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 OR4C16Q8NGL9 310 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 CHRDL1Q9BU40 450 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 PDCD10Q9BUL8 212 aa15.96■□□□□ 0.15
HMGB3-205ENST00000455596 SLIRPQ9GZT3 109 aaKnown RBP15.96■□□□□ 0.15
HMGB3-205ENST00000455596 OR11H12B2RN74 326 aa15.95■□□□□ 0.14
HMGB3-205ENST00000455596 SCAF4O95104 1147 aaKnown RBP15.95■□□□□ 0.14
HMGB3-205ENST00000455596 SURF2Q15527 256 aaPredicted RBP15.95■□□□□ 0.14
HMGB3-205ENST00000455596 DEFB125Q8N687 156 aa15.95■□□□□ 0.14
HMGB3-205ENST00000455596 SLC35G3Q8N808 338 aa15.95■□□□□ 0.14
HMGB3-205ENST00000455596 RSL24D1Q9UHA3 163 aaKnown RBP15.95■□□□□ 0.14
HMGB3-205ENST00000455596 CEPT1Q9Y6K0 416 aa15.95■□□□□ 0.14
HMGB3-205ENST00000455596 TRAV25A0A0B4J276 109 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 A0A0B4J293 547 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 I3L2K1 104 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 GSTZ1O43708 216 aaPredicted RBP15.94■□□□□ 0.14
HMGB3-205ENST00000455596 IFNA17P01571 189 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 ADMP35318 185 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 MFAP4P55083 255 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 ANKRD55Q3KP44 614 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 SPINK9Q5DT21 86 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 LINC00322Q6ZN03 302 aaPredicted RBP15.94■□□□□ 0.14
HMGB3-205ENST00000455596 RBPMS2Q6ZRY4 209 aaKnown RBP15.94■□□□□ 0.14
HMGB3-205ENST00000455596 OR52B4Q8NGK2 314 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 RNASE11Q8TAA1 199 aaKnown RBP15.94■□□□□ 0.14
HMGB3-205ENST00000455596 MUC7Q8TAX7 377 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 RRNAD1Q96FB5 475 aaKnown RBP15.94■□□□□ 0.14
HMGB3-205ENST00000455596 CITED4Q96RK1 184 aa15.94■□□□□ 0.14
HMGB3-205ENST00000455596 TXN2Q99757 166 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms