RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 ZNF773Q6PK81 442 aa9.84□□□□□ -0.83
HMGB3-204ENST00000448905 GATAD1Q8WUU5 269 aa9.84□□□□□ -0.83
HMGB3-204ENST00000448905 RARRES2Q99969 163 aa9.84□□□□□ -0.83
HMGB3-204ENST00000448905 Q9H521 79 aa9.84□□□□□ -0.83
HMGB3-204ENST00000448905 SMPXQ9UHP9 88 aa9.84□□□□□ -0.83
HMGB3-204ENST00000448905 PRNDQ9UKY0 176 aa9.84□□□□□ -0.83
HMGB3-204ENST00000448905 TRAV14DV4A0A0A6YYC5 116 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 IGHV3-21A0A0B4J1V1 117 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 FCER2P06734 321 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 ADMP35318 185 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 MFAP4P55083 255 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 EWSR1Q01844 656 aaKnown RBP eCLIP9.83□□□□□ -0.84
HMGB3-204ENST00000448905 ODF3L2Q3SX64 289 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 LPCAT3Q6P1A2 487 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 TMEM116Q8NCL8 245 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 OR6F1Q8NGZ6 308 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 DGCR14Q96DF8 476 aaKnown RBP9.83□□□□□ -0.84
HMGB3-204ENST00000448905 TXN2Q99757 166 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 CHRDL1Q9BU40 450 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 RHPN1-AS1Q9BWJ2 59 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 EHFQ9NZC4 300 aa9.83□□□□□ -0.84
HMGB3-204ENST00000448905 LOC100506127A0A0U1RQW1 187 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 ZNF207O43670 478 aaKnown RBP9.82□□□□□ -0.84
HMGB3-204ENST00000448905 CTSGP08311 255 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 CROCCP3Q8IVE0 287 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 APRG1Q8IVJ8 170 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 OR5H6Q8NGV6 325 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 OR1P1Q8NH06 330 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 C11orf45Q8TAV5 145 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 ZNF2Q9BSG1 426 aaPredicted RBP9.82□□□□□ -0.84
HMGB3-204ENST00000448905 ALMS1Q8TCU4 4167 aa9.82□□□□□ -0.84
HMGB3-204ENST00000448905 IGHV3OR16-8A0A075B7F1 116 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 IGHV7-4-1A0A0J9YVY3 117 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 CHEK1O14757 476 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 XRCC3O43542 346 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 RLN1P04808 185 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 EIF4EP06730 217 aaKnown RBP9.81□□□□□ -0.84
HMGB3-204ENST00000448905 G6PCP35575 357 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 TFPI2P48307 235 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 RFX2P48378 723 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 TCTAP57738 103 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 TAS2R46P59540 309 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 RBMS2Q15434 407 aaKnown RBP9.81□□□□□ -0.84
HMGB3-204ENST00000448905 CENPSQ8N2Z9 138 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 OR5H2Q8NGV7 314 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 FCAMRQ8WWV6 532 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 SLC25A46Q96AG3 418 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 SLC25A38Q96DW6 304 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 RNF2Q99496 336 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 GINS3Q9BRX5 216 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 NSG2Q9Y328 171 aa9.81□□□□□ -0.84
HMGB3-204ENST00000448905 K7EIM0 57 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 DNASE2O00115 360 aaPredicted RBP9.8□□□□□ -0.84
HMGB3-204ENST00000448905 GPR31O00270 319 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 CLEC2LP0C7M8 214 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 ERHP84090 104 aaKnown RBP9.8□□□□□ -0.84
HMGB3-204ENST00000448905 RPP25LQ8N5L8 163 aaKnown RBP9.8□□□□□ -0.84
HMGB3-204ENST00000448905 OR11H2Q8NH07 326 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 OR4A16Q8NH70 328 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 MOB3AQ96BX8 217 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 MISP3Q96FF7 219 aa9.8□□□□□ -0.84
HMGB3-204ENST00000448905 IGKV3-7A0A075B6H7 116 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 MEIS3P1A6NDR6 274 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 GNG7O60262 68 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 PMP2P02689 132 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 FCGR2BP31994 310 aaPredicted RBP9.79□□□□□ -0.84
HMGB3-204ENST00000448905 MFAP2P55001 183 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 TSPAN5P62079 268 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 RPL11P62913 178 aaKnown RBP9.79□□□□□ -0.84
HMGB3-204ENST00000448905 H2BFWTQ7Z2G1 175 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 DUSP18Q8NEJ0 188 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 C2CD4CQ8TF44 421 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 OR10C1Q96KK4 312 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 NXF2Q9GZY0 626 aaKnown RBP9.79□□□□□ -0.84
HMGB3-204ENST00000448905 FAM212BQ9NTI7 297 aaPredicted RBP9.79□□□□□ -0.84
HMGB3-204ENST00000448905 FBXL17Q9UF56 701 aa9.79□□□□□ -0.84
HMGB3-204ENST00000448905 F8W735 103 aaPredicted RBP9.78□□□□□ -0.84
HMGB3-204ENST00000448905 DFFBO76075 338 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 PRSS3P35030 304 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 NPBWR1P48145 328 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 TMEM187Q14656 261 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 TMEM69Q5SWH9 247 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 GBGT1Q8N5D6 347 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 TMEM14BQ9NUH8 114 aa9.78□□□□□ -0.84
HMGB3-204ENST00000448905 IGHV3-49A0A0A0MS15 119 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 SMIM31A0A1B0GVY4 71 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 C15orf61A6NNL5 157 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 I3L2K1 104 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 DEDDO75618 318 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 MT-CO2P00403 227 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 SNCAP37840 140 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 NANOS2P60321 138 aaKnown RBP9.77□□□□□ -0.85
HMGB3-204ENST00000448905 TCF24Q7RTU0 167 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 PINX1Q96BK5 328 aaKnown RBP9.77□□□□□ -0.85
HMGB3-204ENST00000448905 C11orf68Q9H3H3 251 aaKnown RBP9.77□□□□□ -0.85
HMGB3-204ENST00000448905 TMEM231Q9H6L2 316 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 RNF167Q9H6Y7 350 aa9.77□□□□□ -0.85
HMGB3-204ENST00000448905 C11orf94C9JXX5 98 aa9.76□□□□□ -0.85
HMGB3-204ENST00000448905 ST8SIA3O43173 380 aa9.76□□□□□ -0.85
HMGB3-204ENST00000448905 SCGB2A1O75556 95 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms