RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 PPP1R32Q7Z5V6 425 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 RNASEH2CQ8TDP1 164 aaKnown RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 ARHGEF17Q96PE2 2063 aaPredicted RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TDRD15B5MCY1 1934 aaKnown RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 ADAMTSL1Q8N6G6 1762 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 IGHV3OR16-13A0A075B7E8 117 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 IGHV3-74A0A0B4J1X5 117 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 ATXN7O15265 892 aaPredicted RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 CEACAM4O75871 244 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TIAF1O95411 115 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 C1QTNF9P0C862 333 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 LOXL4Q96JB6 756 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 FOXD3Q9UJU5 478 aaPredicted RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 RFPL3SP0C7P2 107 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 FTH1P19P0C7X4 201 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 ASIPP42127 132 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 ID3Q02535 119 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 NUDT11Q96G61 164 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 FBXL15Q9H469 300 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 OSTCQ9NRP0 149 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TMEM74BQ9NUR3 256 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 MYO16Q9Y6X6 1858 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TNS1Q9HBL0 1735 aaKnown RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 CNOT1A5YKK6 2376 aaKnown RBP6.55□□□□□ -1.36
NEDD9-204ENST00000448183 KBTBD11-OT1A0A1B0GTJ5 212 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 H3BUT2 72 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TGFBR3LH3BV60 316 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 APOMO95445 188 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TIMM23BQ5SRD1 257 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 HEPN1Q6WQI6 88 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 FER1L6-AS1Q8NA97 138 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 OR13C6PQ8NH95 151 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 DERL1Q9BUN8 251 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 VCX2Q9H322 139 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 PILRBQ9UKJ0 227 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TRIOBPQ9H2D6 2365 aa6.55□□□□□ -1.36
NEDD9-204ENST00000448183 TRAV9-2A0A087WT02 112 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 C9JCJ5 164 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 CECR9P0C854 216 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 ADMP35318 185 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 SLC25A28Q96A46 364 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 WDR90Q96KV7 1748 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 IGKV1D-13A0A0B4J2D9 117 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 B9A039 149 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 CA1P00915 261 aaPredicted RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 IGKV1-13P0DP09 117 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 GATA2P23769 480 aaPredicted RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 STPG1Q5TH74 334 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 FAM89BQ8N5H3 189 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 RNASE7Q9H1E1 156 aaKnown RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 ZNF703Q9H7S9 590 aaPredicted RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 C21orf62Q9NYP8 219 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 DPM3Q9P2X0 92 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 NPFFO15130 113 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 NAPSAO96009 420 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 GTF3AQ92664 365 aaKnown RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 HIST1H2BLQ99880 126 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 Q9H3A6 140 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 FOXA2Q9Y261 457 aaPredicted RBP6.54□□□□□ -1.36
NEDD9-204ENST00000448183 MYOFQ9NZM1 2061 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 TRBV24-1A0A075B6N3 115 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 MUC21A0A0G2JKD1 596 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 MUC21A0A140T8X8 626 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 PSMB11A5LHX3 300 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 FAM181BA6NEQ2 426 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 TYMSP04818 313 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 MUC21Q5SSG8 566 aa6.54□□□□□ -1.36
NEDD9-204ENST00000448183 IGKV3OR2-268A0A0C4DH90 116 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 A0A1W2PRE2 83 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 CD5P06127 495 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 PSG7Q13046 419 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 FAM216BQ8N7L0 139 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 OR4X2Q8NGF9 303 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 MBD3L1Q8WWY6 194 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 GDF15Q99988 308 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 DCTN5Q9BTE1 182 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 IGKV1-9A0A0C4DH69 117 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 C9orf172C9J069 976 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 J3QRE1 110 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 TMEM50AO95807 157 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 LINC00271P0C7V0 271 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 STARD6P59095 220 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 LY6EQ16553 131 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 FAM90A1Q86YD7 464 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 DUX5Q96PT3 197 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 TMEM242Q9NWH2 141 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 FBXL7Q9UJT9 491 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 ZNF257Q9Y2Q1 563 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 TNFRSF18Q9Y5U5 241 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 COLCA2A8K830 154 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 IGKV3-20P01619 116 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 CCL1P22362 96 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 FBLN7Q53RD9 439 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 SAMD13Q5VXD3 122 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 C1orf162Q8NEQ5 155 aaPredicted RBP6.53□□□□□ -1.36
NEDD9-204ENST00000448183 PLPPR1Q8TBJ4 325 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 ZNF837Q96EG3 531 aaPredicted RBP6.53□□□□□ -1.36
NEDD9-204ENST00000448183 OTORQ9NRC9 128 aa6.53□□□□□ -1.36
NEDD9-204ENST00000448183 IGHV3-49A0A0A0MS15 119 aa6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms