RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 FABP5P3A8MUU1 101 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 IGKCP01834 107 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 SUMO2P61956 95 aaKnown RBP6.13□□□□□ -1.43
VPS53-204ENST00000437048 TMPRSS2O15393 492 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 OCIAD2Q56VL3 154 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 PRSS27Q9BQR3 290 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 PLAC1Q9HBJ0 212 aa6.13□□□□□ -1.43
VPS53-204ENST00000437048 CSRP3P50461 194 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 C1orf53Q5VUE5 145 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 PCSK4Q6UW60 755 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 ZNF841Q6ZN19 808 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 MRPS18BQ9Y676 258 aaKnown RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 H3BUT2 72 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 NAPSAO96009 420 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 TEX38Q6PEX7 206 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 HIGD1CA8MV81 97 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 SHISA9B4DS77 424 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 IFI27L1Q96BM0 104 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 SSBP3Q9BWW4 388 aaPredicted RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 A0A1B0GTL3 188 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 ZNF562Q6V9R5 426 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 ASCL4Q6XD76 172 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 FAM208BQ5VWN6 2430 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 CRXO43186 299 aaPredicted RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 APOHP02749 345 aaPredicted RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 ZNF415Q09FC8 603 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 FER1L6-AS1Q8NA97 138 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 LRRC61Q9BV99 259 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 K7ESM1 405 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 NPPCP23582 126 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 DYNLRB2Q8TF09 96 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 ATP6V0BQ99437 205 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 IL18BPO95998 194 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 C12orf76Q8N812 135 aaPredicted RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 FAM157AC9JC47 383 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 C1QCP02747 245 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 CCL1P22362 96 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 OR11H6Q8NGC7 330 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 GREB1LQ9C091 1923 aaPredicted RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 A0A1B0GWJ7 208 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 WFDC8Q8IUA0 241 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 PPIAL4EA0A075B759 164 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 TRBV7-9A0A0J9YWB2 115 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 PRR33A8MZF0 331 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 PPIAL4DF5H284 164 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 PPIAL4FP0DN26 164 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 PPIAL4AQ9Y536 164 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 IGHV1OR21-1A0A087WYE8 117 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 A0A1W2PR80 420 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 DUSP14O95147 198 aaKnown RBP6.12□□□□□ -1.43
VPS53-204ENST00000437048 CDAP32320 146 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 TMEM170BQ5T4T1 132 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 IL17RELQ6ZVW7 336 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 RTN4RQ9BZR6 473 aa6.12□□□□□ -1.43
VPS53-204ENST00000437048 OOSP1A8MZH6 123 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 NPIPB11E5RHQ5 1161 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 ID3Q02535 119 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 LILRA3Q8N6C8 439 aaPredicted RBP6.11□□□□□ -1.43
VPS53-204ENST00000437048 IFI27L2Q9H2X8 130 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 IGHG4P01861 327 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 CDKN1BP46527 198 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 DUSP2Q05923 314 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 LAGE3Q14657 143 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 FAM89BQ8N5H3 189 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 LINC01555Q8NAE3 123 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 TRBV6-6A0A0A6YYG2 114 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 EAF1Q96JC9 268 aaPredicted RBP6.11□□□□□ -1.43
VPS53-204ENST00000437048 COL18A1P39060 1754 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 PTPRDP23468 1912 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 RUNX1Q01196 453 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 KHDC1LQ5JSQ8 128 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 TMEM95Q3KNT9 176 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 CD300EQ496F6 205 aaPredicted RBP6.11□□□□□ -1.43
VPS53-204ENST00000437048 DEFB108BQ8NET1 73 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 NPFFO15130 113 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 BIVMQ86UB2 503 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 FBXO17Q96EF6 278 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 PGLYRP4Q96LB8 373 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 CLEC7AQ9BXN2 247 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 SPRY3O43610 288 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 ZNF418Q8TF45 676 aaPredicted RBP6.11□□□□□ -1.43
VPS53-204ENST00000437048 ICAM4Q14773 271 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 MBNL2Q5VZF2 373 aaKnown RBP6.11□□□□□ -1.43
VPS53-204ENST00000437048 TRAV8-6A0A0B4J262 113 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 FAM181BA6NEQ2 426 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 ZNF137PP52743 207 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 IGLV3-21P80748 117 aaPredicted RBP6.11□□□□□ -1.43
VPS53-204ENST00000437048 MIC13Q5XKP0 118 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 IDI2-AS1Q9NZ38 188 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 R4GN57 208 aa6.11□□□□□ -1.43
VPS53-204ENST00000437048 TRGV8A0A0C4DH27 118 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 CEACAM4O75871 244 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 TMEM196Q5HYL7 178 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 PIGYQ3MUY2 71 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 RFESDQ8TAC1 157 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 CTHRC1Q96CG8 243 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 CALYQ9NYX4 217 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 AKIRIN1Q9H9L7 192 aaPredicted RBP6.1□□□□□ -1.43
VPS53-204ENST00000437048 NEUROG3Q9Y4Z2 214 aa6.1□□□□□ -1.43
VPS53-204ENST00000437048 TRAV2A0A0B4J234 112 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms