RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 A0A1B0GUS0 222 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 PATE3B3GLJ2 98 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 DIRC3C9JPN6 131 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 TIMM8AO60220 97 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 CA2P00918 260 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 CECR9P0C854 216 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 C8orf88P0DMB2 117 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 MYCNOSP40205 109 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 IER3P46695 156 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF134P52741 427 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF705AQ6ZN79 300 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF826PQ6ZT77 177 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 OSR1Q8TAX0 266 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF596Q8TC21 504 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 LOXL4Q96JB6 756 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ATG101Q9BSB4 218 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 SAMD10Q9BYL1 202 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 FOXJ2Q9P0K8 574 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 GNG12Q9UBI6 72 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 NAT8BQ9UHF3 227 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 IGLV3-9A0A075B6K5 115 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV2OR16-5A0A0B4J2B6 119 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 FAM231BA6NCW3 169 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 PRR33A8MZF0 331 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 SLC17A3O00476 420 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 LAMTOR5O43504 91 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 CGAP01215 116 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 HOXC12P31275 282 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 PLA2G5P39877 138 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 KIR2DL2P43627 348 aaPredicted RBP4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF83P51522 516 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 SUMO1P63165 101 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 CD69Q07108 199 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 OR5I1Q13606 314 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 IBA57Q5T440 356 aaKnown RBP4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 OR8I2Q8N0Y5 310 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 ARL6IP6Q8N6S5 226 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 THAP8Q8NA92 274 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 VN1R17PQ8TDU5 208 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 FAM167A-AS1Q96KT0 104 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 C7orf69Q9H7B7 122 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 PLA2G3Q9NZ20 509 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 KLF12Q9Y4X4 402 aa4.69□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV2-26A0A0B4J1V2 119 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 A0A1W2PNU3 283 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 GGTLC3B5MD39 225 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 SAA2P0DJI9 122 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 IGFBP2P18065 325 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 C3AR1Q16581 482 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 CT45A1Q5HYN5 189 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 RNFT1Q5M7Z0 435 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 FAM53AQ6NSI3 398 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 SLC25A48Q6ZT89 311 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF833PQ6ZTB9 187 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 MIR17HGQ75NE6 70 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 STXBP6Q8NFX7 210 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 OR8B3Q8NGG8 313 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 CT45A3Q8NHU0 189 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 C18orf32Q8TCD1 76 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 GRAMD2BQ96HH9 432 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 OR8B2Q96RD0 313 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 GFRA4Q9GZZ7 299 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 PLEKHA3Q9HB20 300 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 OR51B2Q9Y5P1 312 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 DSCAMO60469 2012 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV3-43A0A0B4J1X8 118 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 TRAV3A0A0B4J244 114 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV1-18A0A0C4DH31 117 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 TRBV6-1A0A0K0K1D8 114 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 A0A1B0GXF2 115 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 DPRXA6NFQ7 191 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 AHRRA9YTQ3 701 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 DLL1O00548 723 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNHIT1O43257 154 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 HYPMO75409 117 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 FOXH1O75593 365 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 C3orf79P0CE67 100 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 IGHV3-43DP0DP04 118 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 RNASE2P10153 161 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 AMTP48728 403 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 PSG5Q15238 335 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 TDRG1Q3Y452 100 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 SPINK9Q5DT21 86 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 SPATA31B1PQ5VZV4 182 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 TMEM105Q8N8V8 129 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 GATD1Q8NB37 220 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 OR5T1Q8NG75 326 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 OR1L4Q8NGR5 311 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 TSKUQ8WUA8 353 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 SAP30LQ9HAJ7 183 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF71Q9NQZ8 489 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 ZNF492Q9P255 531 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 DUSP13Q9UII6 198 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 AMMECR1Q9Y4X0 333 aaPredicted RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 SLC25A15Q9Y619 301 aa4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 DIDO1Q9BTC0 2240 aaKnown RBP4.68□□□□□ -1.66
CCDC88A-203ENST00000412148 IGKV1OR2-108A0A075B7D4 117 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 H0YJW9 148 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 K7EP13 123 aa4.67□□□□□ -1.66
CCDC88A-203ENST00000412148 FSTL3O95633 263 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms