RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 VEGFBP49765 207 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 NEGR1Q7Z3B1 354 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 OSR1Q8TAX0 266 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-206ENST00000409809 MS4A5Q9H3V2 200 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 GZMBP10144 247 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 CCL11P51671 97 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 FAM19A2Q8N3H0 131 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 LRRC61Q9BV99 259 aa11.01□□□□□ -0.65
COL6A3-206ENST00000409809 TMEM131Q92545 1883 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11□□□□□ -0.65
COL6A3-206ENST00000409809 FER1L6-AS1Q8NA97 138 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 NBEAP1P0C6P0 100 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 TGIF1Q15583 401 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 LINC00305Q7Z4B0 112 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 OTORQ9NRC9 128 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 UNC119Q13432 240 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 NRN1LQ496H8 165 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 RAX2Q96IS3 184 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 IFI27L1Q96BM0 104 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 TNFRSF18Q9Y5U5 241 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 CACNA1EQ15878 2313 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 ZNF205O95201 554 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 SSTR5P35346 364 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 KIR3DS1Q14943 382 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 SRSF7Q16629 238 aaKnown RBP eCLIP11□□□□□ -0.65
COL6A3-206ENST00000409809 SHISA5Q8N114 240 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 OR5P3Q8WZ94 311 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 TRACP01848 142 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 MPV17P39210 176 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 LAGE3Q14657 143 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 TEX38Q6PEX7 206 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 PLEKHB2Q96CS7 222 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 SARGQ9BW04 601 aa11□□□□□ -0.65
COL6A3-206ENST00000409809 PPIHO43447 177 aaKnown RBP10.99□□□□□ -0.65
COL6A3-206ENST00000409809 PLAUP00749 431 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 DEFB127Q9H1M4 99 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 PYY3Q5JQD4 70 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 TM4SF5O14894 197 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 TSPAN7P41732 249 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 FBXW9Q5XUX1 488 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 FAM90A2PQ658T7 463 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 FAM57AQ8TBR7 257 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 SIRT4Q9Y6E7 314 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-206ENST00000409809 LINC01555Q8NAE3 123 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 ZNF815PA8K554 130 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 CBLN3Q6UW01 205 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 hCG_38984A0A1B0GV85 526 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 MOSP00540 346 aa10.99□□□□□ -0.65
COL6A3-206ENST00000409809 FOXA3P55318 350 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-206ENST00000409809 C2orf82Q6UX34 121 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 GPBAR1Q8TDU6 330 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 GNRHR2Q96P88 292 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 IGHV4-39P01824 125 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 ID4P47928 161 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 ZNF818PQ6ZRF7 136 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 FAM90A1Q86YD7 464 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 HCFC1P51610 2035 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 WNK1Q9H4A3 2382 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 IGHV3-64DA0A0J9YX35 117 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 UTF1Q5T230 341 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 C18orf15Q96N68 181 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 PCOLCE2Q9UKZ9 415 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 LOXL2Q9Y4K0 774 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 CEACAM4O75871 244 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 RND2P52198 227 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 FAM166AQ6J272 317 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 EAF1Q96JC9 268 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-206ENST00000409809 OBSL1O75147 1896 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 PDCD1Q15116 288 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 VN1R4Q7Z5H5 301 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 CCL17Q92583 94 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 PHF7Q9BWX1 381 aaPredicted RBP10.98□□□□□ -0.65
COL6A3-206ENST00000409809 ZNF83P51522 516 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 ABHD17AQ96GS6 310 aa10.98□□□□□ -0.65
COL6A3-206ENST00000409809 DTX1Q86Y01 620 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 C8orf44Q96CB5 159 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 REG4Q9BYZ8 158 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 HILPDAQ9Y5L2 63 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 CXCL10P02778 98 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 FGF11Q92914 225 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 KCNK17Q96T54 332 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 LOC105371242A0A075B767 164 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 TRAV21A0A0B4J279 112 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 PPIAL4CA0A0B4J2A2 164 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 NDUFA3O95167 84 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 IL6RP08887 468 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-206ENST00000409809 PPIAL4GP0DN37 164 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 ADAMTSL5Q6ZMM2 481 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 BCL6BQ8N143 479 aaPredicted RBP10.97□□□□□ -0.65
COL6A3-206ENST00000409809 EML5Q05BV3 1969 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 SRD5A1P18405 259 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 FAM106AQ4KMX7 169 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 WDR82Q6UXN9 313 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GGTLC1Q9BX51 225 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 TRAV14DV4A0A0A6YYC5 116 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GAGE12JA6NER3 117 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GAGE7O76087 117 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 NTN1O95631 604 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GAGE12FP0CL80 117 aa10.97□□□□□ -0.65
COL6A3-206ENST00000409809 GAGE12GP0CL81 117 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms