RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DOCK6Q96HP0 2047 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 CREBBPQ92793 2442 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 J3KRW8 73 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 HBBP68871 147 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 ATXN8Q156A1 80 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 LRRC75A-AS1Q8N1F1 130 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 TPRX1Q8N7U7 411 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 SDHCQ99643 169 aaPredicted RBP6.15□□□□□ -1.42
SCN9A-202ENST00000409435 VSIG4Q9Y279 399 aa6.15□□□□□ -1.42
SCN9A-202ENST00000409435 CEACAM18A8MTB9 384 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 C10orf113Q5VZT2 155 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 RBM38Q9H0Z9 239 aaKnown RBP6.15□□□□□ -1.43
SCN9A-202ENST00000409435 G6PC2Q9NQR9 355 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 AURKAIP1Q9NWT8 199 aaPredicted RBP6.15□□□□□ -1.43
SCN9A-202ENST00000409435 KIAA1671Q9BY89 1806 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 TRAV30A0A087WSZ9 112 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM272A0A1B0GTI8 110 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 K7EM74 188 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 UBE2L6O14933 153 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 NPFFO15130 113 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 PSCAO43653 123 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 ATP5LO75964 103 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 TSPOP30536 169 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 ZP1P60852 638 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM155Q4W5P6 130 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 FAM53AQ6NSI3 398 aaPredicted RBP6.15□□□□□ -1.43
SCN9A-202ENST00000409435 CFAP161Q6P656 301 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 Q8NFD4 153 aa6.15□□□□□ -1.43
SCN9A-202ENST00000409435 EAF1Q96JC9 268 aaPredicted RBP6.15□□□□□ -1.43
SCN9A-202ENST00000409435 ISG20L2Q9H9L3 353 aaKnown RBP6.15□□□□□ -1.43
SCN9A-202ENST00000409435 TMSB15BA0A087X1C1 80 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 INAFM1C9JVW0 142 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 SYNGR1O43759 233 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 CTAG2O75638 210 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 MOSP00540 346 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 CFDP00746 253 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 SAMD5Q5TGI4 173 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 LCNL1Q6ZST4 164 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 ZNF479Q96JC4 524 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 ZNF488Q96MN9 340 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 KLF4O43474 513 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 TRACP01848 142 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 WT1P19544 449 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 RPS20P60866 119 aaKnown RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 MEF2BQ02080 365 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 XAF1Q6GPH4 301 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 SLC25A47Q6Q0C1 308 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 RIMKLAQ8IXN7 391 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 NRGNQ92686 78 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 TECTAO75443 2155 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 ANKRD12Q6UB98 2062 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 ODAMA1E959 279 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 E7EQL1 145 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 PLAUP00749 431 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 IGHV4-39P01824 125 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 LGALS1P09382 135 aaKnown RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 CRYBB2P43320 205 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 UBE2V1Q13404 147 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 C3orf36Q3SXR2 165 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 MORN3Q6PF18 240 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 MAVSQ7Z434 540 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 OR10J6PQ8NGY7 276 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 C2orf88Q9BSF0 95 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 NHP2Q9NX24 153 aaKnown RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 SLC25A37Q9NYZ2 338 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 GREB1LQ9C091 1923 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 TCRBV5S2A0A599 114 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 GRIFINA4D1Z8 144 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 HOXA3O43365 443 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 DAZAP2Q15038 168 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 TEX38Q6PEX7 206 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 PHLDA1Q8WV24 401 aaPredicted RBP6.14□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM160Q9NX00 188 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 SLC25A15Q9Y619 301 aa6.14□□□□□ -1.43
SCN9A-202ENST00000409435 FFAR1O14842 300 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 TM4SF5O14894 197 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 MPDU1O75352 247 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 CEACAM4O75871 244 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 CEACAM8P31997 349 aaPredicted RBP6.13□□□□□ -1.43
SCN9A-202ENST00000409435 ZNF474Q6S9Z5 364 aaPredicted RBP6.13□□□□□ -1.43
SCN9A-202ENST00000409435 KCNS1Q96KK3 526 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 TNFRSF12AQ9NP84 129 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 TRBV7-9A0A0J9YWB2 115 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 TMEM250H0YL14 139 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 ITGB1BP1O14713 200 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 IGHV3-11P01762 117 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 CELA3BP08861 270 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 HSPE1P61604 102 aaKnown RBP6.13□□□□□ -1.43
SCN9A-202ENST00000409435 SYT8Q8NBV8 401 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 CLDND2Q8NHS1 167 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 PLSCR2Q9NRY7 297 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 PLXNA3P51805 1871 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 C10orf128Q5T292 105 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 ST6GALNAC6Q969X2 333 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 RRHO14718 337 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 FAM201AQ5SY85 155 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 FAM216BQ8N7L0 139 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 ST20Q9HBF5 79 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 NDUFB4O95168 129 aa6.13□□□□□ -1.43
SCN9A-202ENST00000409435 PRTN3P24158 256 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms